Hbla007435.1
Basic Information
- Insect
- Hoplodrina blanda
- Gene Symbol
- egg
- Assembly
- GCA_949316365.1
- Location
- OX438574.1:3150432-3183481[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5 7.5e+03 -2.8 0.1 28 38 819 832 792 833 0.68 2 2 8e-13 2.4e-09 37.2 0.0 4 75 864 928 861 930 0.89
Sequence Information
- Coding Sequence
- ATGAGCCATCTTGAAAATGATCTCCTACCCTCAGAAAAACAAGAAACACCGAAGAAATCCCCATCTAAATCGCCAAGCAACAGCAATATATCGCCCAAGCAATCACCGACCAAGCTAAGCCAGTCTCCCTGCAAGCAATCACCAAGCAAGCTGAAGAATTTGGCGATTACGACGCAAGAAGCCAGCTCGTTTCTTAATATTGTCGATTTGGAAGAGAGCAGTTCTTCTGAAGATGATATACAAGAGGTACAAAAACCCACAGAACCAGAGACTAAAGACAAAGAGACCAAAGACAAACCTTCTTCTCCGGACTCGGATGTAACCAACGttaacataccaaccggcataGAAATCATGTGTACATCCGGCGGAAATACGTCAGAAATTACGACTAAAGAGGGGGAGGTCGTTATCAGTGGAGTACCTAAGCCCCCACCACATAAACcagctCGACTGAATACGAGCGAAGTTTCAATAAAGACTGTCAGTACCACAGAATCAATCGTTATACCTGAAACCAAGATGAACGAACTGAATCAAGCAACAACACAGCCTAAACGTAAACTGAGTCTAGAAATATTCAATCTGGATTCTGACGAAGAAGATAGTGCGGCTAAAGAAAAATCACCTCATCCTTCACCACAAAAGATGACGGCCTCGGAACTGGACAAGGCTCGGGAAACTAATAAATGTATCAACTATGCCTGTAAGAGCGACTGCACGGTGCCTTACAAAGTGGCAGAACCGGCGGAGGTTGCTTTTTACGATGCGGGCAGGAAGAGGCGGTCTATGGTGTGCCAGCCATGTGCCGATGTGGTCGCTAATAGGTCTAAGAACCTAATGCAAGGCATCAAGGATATGACTCCAATCCTGGACCTTGACATGGGCAGCTTCTCTCAGGACCTGGTCCAGATCTCCGACTCGGAGTCTGAAGACGAAGACATGACTCCTGAGGAACCGAAAGAGCCTATTGGAGAGAAGGGAGCTAAATTCATAGAAGATAACTTAGCCAAGTACCTGAACGAGACGTGGAAGAAGTATGAGATGGACGTCCGACTGAAGGAGACGCAAATCATGTTAGATGACGAGATTGAGAAGCTCGAACaggACAGCAAAGAAATCGACGCGATGTTAAACGAATGTCAGATAGCGACAGACAAGCTTCGCAACGAGTTGTACGCGACGTTCGAGGGTCGGCGCCAAGAGTTACCCGCTATTATACTGTACGACACCCCTGAATCTAAATATATTGGACTAGAGGAGGACCTGAACCCGCCATCTCCCGCCGTGCCGCCTAGTACGCCTACCCCTCCCCCTGTTGAAGCATCTACGCCATCTATTTCAACTCGCCGGACCAAGCGTCGTTTGTCTTCAACCAGCGAGACTCCAGCCAAGCGTCCTGCCATACCTCTTGGGTACGCACCTTTGGGTACCCCAGAGTTTAAGGAAAAGGAGGCACCAATAATAGATTACAAAATTGAAGATGATACAGACATATCAGTAGTGAAGTTATCATCGGAAGCCGCCCCCGCAGAGCTACCCCCTCCTGGGGAGATCTCCCGCCCCCCTCTGCGCGTGAGCATGCCAGTCTACGCAATGAAGAATGCCTTCGGACCCTGGCTCAAGGGGAAAATACTGGAGATACAGCCAAAGAGTGCAAGTGGGgGCAACCCATTCTCTCTGTGTCGTGTGAAATTCGACCATAAAACAAAGACTACTGGCAAAGTTTTGGCGGCGCGGTGTATAGCGTATTCTGAGCCCGCTGACGTCAGAATGACTATTGgTACTCGTCTAATAGCCCTGTTCAAGGATACAAACAGGCGGGAGTCTTACTATTCGGGCGTTGTGGCTGAAATCCCCAATCCGGTCAATAATTATAGATACCTAGTATTCTTCGACGATGGCTACGCCCAGTACGTGCAGCATCAGTACACGCGTCTTGTCTGCGAGAGCTCCCCCCTCGTCTGGGAGGAAGTGCATCCATTCTCGAGGGAGTTCGTCCGCAAGTATTTACTAGCGTACCCAGAGAGACCCATGGTTAGGTTGCATGAGGGTCAGCATCTCAAAACCGAGTGGAATGGCAAATGGTGGTCGTCTCGTATCACGCGCGTGGACGCGTCGCTGGCGCAGGTGATGTTCGTGGGCGACGGGCGGCGCGAGTGGATCTACCGCGGCTCCACGCGCCTCGCGCCGCTCTACCTCGAGCTGCGCGCCGCGCAGAGGCACCGCGTGCGCCCCATGCCACGGAGCAAGGCGCAACCCAGGTTAAATATGCCGTACGTGGAGTACACTCGGTCGGACGAGCCGGGAGCTGAGAAACATGCGGAGATGTACGCACAGCATCAACATCAGCAACAAAATGAGGAGATACGTCGTCAACGCGCCGTGGCCAAGAAGTCGACATCAGCGCCCCCACAGATATTCCCCCCGTCATCACAACAGGTAGCGTCCAACGCGATGGACCCAGTCACCAGCAGAGTTGTGTACTACACACCAAAGAACGCTGTGAAACCGTTGAAGATGGTCCCACACAAATGCTCTCCAAAATGCAAGCGCACCGACGTGCTTTCGCTAAAGGATTTGAGGACATACAATCCACTGGCTAAACCACTGCTGAGCGGATGGGAGAGACAAATAATCCGCTACAAAGGCCATAAGGAGGTGATGTACCGCGCCCCCTGCGGCCGGCGCCTGCGCAACATGCGCGAGCTACACATCTACCTACGATCAATAGAGAGCGACTTGCCTGTGGATCTGTTCGACTTCCACCACGCGACGCATTGCCTCGCCGAGTTTGTGCTTAACAAGTGTCTTGTTGGCAAGAAGGACCTGTCCCACGGCAAGGAGAACGTGCCGGTCCCCTGCGTGAACTACTACGACGACTCCCTGCCGGAGTTCTGCTCGTACAACACGGAGCGCACGCCCACAGCCGGCGTGCCGCTCAATCTTGCACCCGAGTTCCTGTGCGGCTGCGACTGTACTGATGACTGCCAGGATAAATCAAAGTGCGCTTGCTGGAAGATGACGCTAGAGGGCGCTCGGACCATCGGGCTGAAAGGGCCCAATGTGGGCTATGTGTATAGAAGATTGCCCGAACCGTTGCCATCTGGGATATACGAGTGCAACTCTAGGTGTAAATGCAAGCATACATGTCTGAACCGCGTGGCGCAGCAACCACTGCAGTTAAAGTTACAGGTATTTAAGACTCCGAACCGCGGTTGGGGCATCCGTGCACTGAACGACGTGCCAAAAGGATCGTTCCTATGCGTGTACGCCGGTAACCTGCTCACAGATGCTACAGCTAACTTGgATGGTTTGAATGAAGGAGACGAGTATTTAGCTGAGTTAGATTACATAGAAGTAGTGGAGCAAATGAAAGAGGGATATGAAGAGGATATACCTGATGCTGATAAGAAACTGATCAAGAAAGAATTAGCTAAGGAGGGGGAGGAGAGCGATGAGGATGAACCTTCATCGTCTGAAGAGGAGGACACGGCGTCGAAGACTGACAAAGAGGATGACGACTTCAGACCGGGATACATTGGTCTCAGTGTTGCGGAGTTCAGCAAACGTCTCCGTAAACGcgagaaaacaaaaaaagataaagaaGAACCGGCAGCTGATGAAAAAGATACAATAAAAGATATGAATAAAGATCCTAGAAAAGATACTATCAAAGAAGGGAACCAAGATACAAATACAGAAGAGAATAAAGATACTATCAAAGATGAGATAAAAGAAGAGACGAAAGAACCAAATGGAGAAGAAGAATGTATCACCATCAGTGATGATGAAGAAGTGCGAGAGCCATCAAGATTCACAGTACAAGACAATATGAAAGCTAATGAATATATTTCTAAATACAAATCAGTTCGTACGTTGTTCGGCATGGACGAGGCGTGCTATATCATGGACGCTAAGGTTCAAGGCAACATCGGCAGATACCTCAATCACTCCTGTTGCCCAAATGTGTTTGTACAAAACGTGTTCGTGGACACCCACGACCCCCGGTTCCCCTGGGTCGCGTTCTTCGCGCTCTCACACATCAAAGCGGGTACCGAACTGACATGGAACTACAATTATGACGTGGGTTCGGTTCCCGGGAAGATACTTTATTGCTACTGTGGGGCTGCCAACTGTAGGGGACGgctgttgtaa
- Protein Sequence
- MSHLENDLLPSEKQETPKKSPSKSPSNSNISPKQSPTKLSQSPCKQSPSKLKNLAITTQEASSFLNIVDLEESSSSEDDIQEVQKPTEPETKDKETKDKPSSPDSDVTNVNIPTGIEIMCTSGGNTSEITTKEGEVVISGVPKPPPHKPARLNTSEVSIKTVSTTESIVIPETKMNELNQATTQPKRKLSLEIFNLDSDEEDSAAKEKSPHPSPQKMTASELDKARETNKCINYACKSDCTVPYKVAEPAEVAFYDAGRKRRSMVCQPCADVVANRSKNLMQGIKDMTPILDLDMGSFSQDLVQISDSESEDEDMTPEEPKEPIGEKGAKFIEDNLAKYLNETWKKYEMDVRLKETQIMLDDEIEKLEQDSKEIDAMLNECQIATDKLRNELYATFEGRRQELPAIILYDTPESKYIGLEEDLNPPSPAVPPSTPTPPPVEASTPSISTRRTKRRLSSTSETPAKRPAIPLGYAPLGTPEFKEKEAPIIDYKIEDDTDISVVKLSSEAAPAELPPPGEISRPPLRVSMPVYAMKNAFGPWLKGKILEIQPKSASGGNPFSLCRVKFDHKTKTTGKVLAARCIAYSEPADVRMTIGTRLIALFKDTNRRESYYSGVVAEIPNPVNNYRYLVFFDDGYAQYVQHQYTRLVCESSPLVWEEVHPFSREFVRKYLLAYPERPMVRLHEGQHLKTEWNGKWWSSRITRVDASLAQVMFVGDGRREWIYRGSTRLAPLYLELRAAQRHRVRPMPRSKAQPRLNMPYVEYTRSDEPGAEKHAEMYAQHQHQQQNEEIRRQRAVAKKSTSAPPQIFPPSSQQVASNAMDPVTSRVVYYTPKNAVKPLKMVPHKCSPKCKRTDVLSLKDLRTYNPLAKPLLSGWERQIIRYKGHKEVMYRAPCGRRLRNMRELHIYLRSIESDLPVDLFDFHHATHCLAEFVLNKCLVGKKDLSHGKENVPVPCVNYYDDSLPEFCSYNTERTPTAGVPLNLAPEFLCGCDCTDDCQDKSKCACWKMTLEGARTIGLKGPNVGYVYRRLPEPLPSGIYECNSRCKCKHTCLNRVAQQPLQLKLQVFKTPNRGWGIRALNDVPKGSFLCVYAGNLLTDATANLDGLNEGDEYLAELDYIEVVEQMKEGYEEDIPDADKKLIKKELAKEGEESDEDEPSSSEEEDTASKTDKEDDDFRPGYIGLSVAEFSKRLRKREKTKKDKEEPAADEKDTIKDMNKDPRKDTIKEGNQDTNTEENKDTIKDEIKEETKEPNGEEECITISDDEEVREPSRFTVQDNMKANEYISKYKSVRTLFGMDEACYIMDAKVQGNIGRYLNHSCCPNVFVQNVFVDTHDPRFPWVAFFALSHIKAGTELTWNYNYDVGSVPGKILYCYCGAANCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01441120;
- 90% Identity
- -
- 80% Identity
- -