Hbla017245.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hoplodrina blanda
Gene Symbol
Dsp1
Assembly
GCA_949316365.1
Location
OX438586.1:12369480-12379565[-]

Transcription Factor Domain

TF Family
HMG
Domain
HMG_box domain
PFAM
PF00505
TF Group
Other Alpha-Helix Group
Description
High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.5e-16 1.8e-13 51.2 2.8 5 68 318 383 314 384 0.96
2 2 6.6e-22 4.8e-19 69.1 1.8 1 69 405 473 405 473 0.99

Sequence Information

Coding Sequence
ATGGGGGATCGGGGCGCGACGGGGGACGCTTGGGGTGCGCGCGACGATGCCTCGTGGTGGCCGAGTGGCGCAGGTGAACTACAGCACCAACAACAATTACATGAGGAGATCGCAAGAAGTACTGCCGCCTCAACTCATCAACTCTATACATACAAAATGACCGGTGGATTTTCGAACAATGGTGGTGATACCTCAACCCCGAGTTATGATTACCGTATAATGTCAAATTCAAATGCAAGAGAAGAATCTCCTCAACAACCATGGTGGTATGCATCAGGATCAGTAGAGTCGCAACAAACATCTTCTCCTACGCCACAAAGTCAGTCAAGTCCTGATTCTGAACATAATAATCAGCAAGCTAATGGTATACAACAGAACCATCAGACTCTGCAGCAGGTGCAACAGGAGCAAAACCAGGCTATTCAACAGCAACAGCAGAATCAGCTGCAACAACAGCTGCAGCAACAAAACTTGCAACAAGCGCTTCAACAACACAATCGGACACTGCAACAGACtttgcagcagcagcagcaaaGTCAACAGGAGACTTTGCAGCAAATGTTGCAACAACATCAACAGCAGCAACAGCAACAACAGCAGCAACAGCAACAGCAGCAGCAacagcagcaacaacaacaacagcaacaaGCTTTGCAGCAGAGTCTTCAACAGACTCTGCAAGTGAGCCCAGCACAAGCCCAAGCTATTGTGCAAGCTCAGGCAGCTTTGCAACAGCAAGTTGCTCAAACTTTGCAACAACAGCaacagactctgcatgaacaGTTACAGGCTGTCCAACAACAACAAATTCAAGCTGCATTACAACGGCAGTCTGCTACATTACAGGAATTGCAGCACCAAGCTCAACAGCAGGCGCTAATAGCCCAAGCTCAAGCAACAGTCAAACAGAAGATGCCGAGGGCACGGGCGTATAATAAGCCGAGGGGACGCATGACAGCTTATGCATTCTTCGTACAGACGTGCCGTGAGGAACACAAGAAGAAACATCCAGATGAGAATGTTGTGTTCGCTGCCTTCTCCAAGAAGTGCGCTGAGAGGTGGAATACAATGTCAGAGAAAGAAAAGCAACGGTTCCACGAGATGGCCGAGCAGGACAAGAGGCGTTTTGACCTGGAGATGCAGAATTACGTGCCTCCTAAAGACATAAAGGTGCGCGGGCGCAAGCGGCAACAGATGAAGGACCCCAACGCGCCCAAGCGATCGCTATCGGCATTCTTTTGGTTCTGCAACGACGAGCGTTCAAAGGTGAAGGCTACCAACCCAGAGTACACAATGGGCGACATCGCCAAGGAGCTGGGTAGGCGTTGGGCAGCCGCCGAACCCGAGACCAAGTCTAAGTACGAGAGTCTGTCAGAACAGGATAAGGCGAGATATGATCGGgaaaTGACGGCATACAAGAAGGGCCCGTTAGCGCTAACGCTGCAGCAGCAGGCAGTGGTCGCCGAGGTGGACGAGGACGGCGACTTCGACGCCGAGGAGGAGTACAAGTGA
Protein Sequence
MGDRGATGDAWGARDDASWWPSGAGELQHQQQLHEEIARSTAASTHQLYTYKMTGGFSNNGGDTSTPSYDYRIMSNSNAREESPQQPWWYASGSVESQQTSSPTPQSQSSPDSEHNNQQANGIQQNHQTLQQVQQEQNQAIQQQQQNQLQQQLQQQNLQQALQQHNRTLQQTLQQQQQSQQETLQQMLQQHQQQQQQQQQQQQQQQQQQQQQQQQQALQQSLQQTLQVSPAQAQAIVQAQAALQQQVAQTLQQQQQTLHEQLQAVQQQQIQAALQRQSATLQELQHQAQQQALIAQAQATVKQKMPRARAYNKPRGRMTAYAFFVQTCREEHKKKHPDENVVFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKRRFDLEMQNYVPPKDIKVRGRKRQQMKDPNAPKRSLSAFFWFCNDERSKVKATNPEYTMGDIAKELGRRWAAAEPETKSKYESLSEQDKARYDREMTAYKKGPLALTLQQQAVVAEVDEDGDFDAEEEYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00300200;
90% Identity
iTF_00809121; iTF_00785186; iTF_01076487; iTF_01538729; iTF_01285522; iTF_00274411; iTF_00120493; iTF_00147442; iTF_01246966; iTF_00450096; iTF_01377456; iTF_00018147; iTF_00017320; iTF_01491920; iTF_00273585; iTF_01362417; iTF_01221555; iTF_01338740; iTF_01029250; iTF_01030210; iTF_00038756; iTF_00036706; iTF_01085220; iTF_00301157; iTF_00771909; iTF_00850725; iTF_00973765; iTF_00037798; iTF_00711846; iTF_01094022; iTF_01361607; iTF_00172936; iTF_00300200; iTF_00758152; iTF_01533032; iTF_00831209; iTF_00951817; iTF_01527209; iTF_00302090; iTF_00851786; iTF_01230570; iTF_01117195; iTF_01119316; iTF_01118294; iTF_00111647; iTF_00122380; iTF_00685421; iTF_00446126; iTF_00928686; iTF_01027310; iTF_01439919; iTF_01061874; iTF_00121427; iTF_00667475; iTF_01441075; iTF_01363092; iTF_01028277; iTF_00042614; iTF_00374102; iTF_01026166; iTF_00425367; iTF_01094903; iTF_00237560; iTF_00906136; iTF_00364010; iTF_01031128; iTF_01084248; iTF_01093080; iTF_00907865; iTF_00907031; iTF_00888250; iTF_01533914; iTF_00043483; iTF_00071419; iTF_00124252; iTF_00041757; iTF_00952701; iTF_01340093; iTF_01534814; iTF_00123359; iTF_00622815; iTF_01062783; iTF_01063744; iTF_01260085; iTF_00327062; iTF_01264598; iTF_00784375; iTF_00783464; iTF_00447128; iTF_00445162; iTF_01526002; iTF_00375200; iTF_01342200; iTF_00049887; iTF_00171737; iTF_00072142; iTF_00000317; iTF_00001158; iTF_01531999; iTF_00726343;
80% Identity
iTF_00809121;