Cpis011756.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ceramica pisi
Gene Symbol
Dsp1
Assembly
GCA_963859965.1
Location
OY982533.1:7215537-7224330[+]

Transcription Factor Domain

TF Family
HMG
Domain
HMG_box domain
PFAM
PF00505
TF Group
Other Alpha-Helix Group
Description
High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.1e-16 3.1e-13 51.2 2.8 5 68 321 386 317 387 0.96
2 2 5.4e-22 8.1e-19 69.1 2.2 1 69 408 476 408 476 0.99

Sequence Information

Coding Sequence
ATGGGGGATCGGGGCGCGACGGGGGACGCTTGGGGTGCGCGCGACGATGCCTCGTGGTGGCCGGGTGGCGCAGGTGAACTACAGCATCAACAACAATTACATGAGGAGATCGCAAGAAGCACTGCCGCATCAACTCATCAACTTTACACATACAAAATGACCGGTGGATTTTCGAACAACGGCGGTGATACCTCAACTCCGAGCTATGATTACCGCATAATGTCAAATTCAAACGCGAGAGAAGAATCGCCTCAGCAACCATGGTGGTATGCATCTGGATCGGTAGAGTCGCAACAAACATCATCTCCTACGCCACAAAGTCAGTCAAGTCCTGACTCGGAACAGAATAATCAGCAAGCTAATGGTATACAACAGAACCACCAATCTCTGCAGCAGGCACAACAGGAGCAAAACCAGGCAATTCAACAGCAGCAGAATCAGATGCAACAGCAGTTGCAGCAACAGAACTTGCAACAAGCGCTGCAACAGCATAACCGCACACTACAACAGACTTTGCAGCAACAGCAGCAAAGTCAGCAAGAGACTTTGCAGCAGATGTTGCAACAGCATCAACAGCAGCATCAGcaacaacaacagcagcagcaacaacaacagcagcagcaacaacaacagcagcaacaacaacagcaacaacaaGCTCTCCAGCAGAGTCTCCAACAGACTCTACAAGTGAGCCCAGCACAGGCTCAAGCTATTGTTCAAGCTCAGGCAGCTCTGCAACAGCAAGTTGCTCAGACTCTgcagcaacaacaacaaactCTGCATGAACAGTTACAAGCTGTCCAGCAACAACAAATTCAAGCTGCCTTACAACGGCAATCTGCTACGCTACAGGAGTTGCAGCACCAAGCTCAGCAGCAGGCGTTAATAGCCCAAGCTCAAGCCACCGTTAAACAGAAGATGCCGAGGGCAAGGGCCTACAACAAGCCGAGGGGACGCATGACAGCTTATGCATTCTTCGTTCAGACCTGCCGTGAGGAACACAAGAAGAAACACCCTGATGAGAATGTTGTGTTTGCTGCGTTCTCGAAGAAGTGTGCTGAGAGGTGGAATACGATGTCAGAGAAAGAAAAGCAGCGGTTCCACGAGATGGCCGAACAGGACAAGAGGCGGTTCGACCTGGAGATGCAGAACTACGTGCCTCCCAAAGACATGAAGGTGCGCGGGCGCAAGCGGCAGCAGATAAAGGATCCTAACGCGCCTAAGCGATCGCTGTCAGCATTTTTCTGGTTCTGCAATGACGAGCGCTCGAAGGTTAAGGCTAATAACCCGGAGTACACCATGGGGGACATCGCCAAGGAGTTGGGCAGACGCTGGGCGGCCGCCGAGCCGGAGACCAAGTCTAAGTACGAGAGTCTGTCGGAGCAGGATAAGGCGAGATATGATCGGgaAATGACAGCATACAAGAAAGGCCCATTAGCACTAACGCAGCAGCAACAAGCAGTGGTCGCCGAAGTAGACGAAGATGGCGACTTTGACGCCGAAGAAGAGTACAAGTGA
Protein Sequence
MGDRGATGDAWGARDDASWWPGGAGELQHQQQLHEEIARSTAASTHQLYTYKMTGGFSNNGGDTSTPSYDYRIMSNSNAREESPQQPWWYASGSVESQQTSSPTPQSQSSPDSEQNNQQANGIQQNHQSLQQAQQEQNQAIQQQQNQMQQQLQQQNLQQALQQHNRTLQQTLQQQQQSQQETLQQMLQQHQQQHQQQQQQQQQQQQQQQQQQQQQQQQQALQQSLQQTLQVSPAQAQAIVQAQAALQQQVAQTLQQQQQTLHEQLQAVQQQQIQAALQRQSATLQELQHQAQQQALIAQAQATVKQKMPRARAYNKPRGRMTAYAFFVQTCREEHKKKHPDENVVFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKRRFDLEMQNYVPPKDMKVRGRKRQQIKDPNAPKRSLSAFFWFCNDERSKVKANNPEYTMGDIAKELGRRWAAAEPETKSKYESLSEQDKARYDREMTAYKKGPLALTQQQQAVVAEVDEDGDFDAEEEYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01334881; iTF_00156226; iTF_00010056; iTF_01464141; iTF_00785186; iTF_01029250; iTF_01026166; iTF_01031128; iTF_00973765; iTF_00342182; iTF_00823879; iTF_00157185; iTF_00441474; iTF_01076487; iTF_01197706; iTF_00823024; iTF_01360598; iTF_00908828; iTF_00637635; iTF_01436072; iTF_01527209; iTF_00433130; iTF_00947889; iTF_00432182; iTF_00968010; iTF_01173258; iTF_00723939; iTF_01230570; iTF_00928686; iTF_01028277; iTF_00621980; iTF_00810048; iTF_00809121; iTF_00685421; iTF_00072142; iTF_00171737; iTF_01415823; iTF_01251719; iTF_01083312; iTF_00468156; iTF_00007069; iTF_01416765; iTF_01362417; iTF_01285522; iTF_01526002; iTF_00325365; iTF_00784375; iTF_00783464; iTF_00447128; iTF_01377456; iTF_01135737; iTF_01134772; iTF_01502073; iTF_00636386; iTF_01030210; iTF_00018147; iTF_00709219; iTF_00038756; iTF_00036706; iTF_01085220; iTF_00301157; iTF_00001158; iTF_00037798; iTF_00711846; iTF_00017320; iTF_00172936; iTF_01533032; iTF_00831209; iTF_00951817; iTF_01538729; iTF_00282378; iTF_00281314; iTF_00302090; iTF_00274411; iTF_01117195; iTF_01119316; iTF_01118294; iTF_00889196; iTF_01152141; iTF_00446126; iTF_01439919; iTF_00450096; iTF_01491920; iTF_00273585; iTF_00147442; iTF_01061874; iTF_01221555; iTF_01332691; iTF_01441075; iTF_01260085; iTF_00042614; iTF_00327062; iTF_00374102; iTF_00821814; iTF_01166678; iTF_01264598; iTF_00425367; iTF_00932535; iTF_00237560; iTF_00906136; iTF_00364010; iTF_01084248; iTF_01342200; iTF_00907865; iTF_00907031; iTF_00000317; iTF_00041757; iTF_00952701; iTF_00771909; iTF_00049887; iTF_00111647; iTF_00622815; iTF_00677599; iTF_01062783; iTF_01531999; iTF_00726343; iTF_00375200; iTF_01063744; iTF_01075424; iTF_00021306; iTF_00462372; iTF_00411443; iTF_00888250; iTF_01533914; iTF_00071419; iTF_00657179; iTF_00148449; iTF_00149378; iTF_00659426; iTF_01463236; iTF_00871273; iTF_00412491; iTF_00680525; iTF_00658384; iTF_00026833; iTF_00027734; iTF_00022778; iTF_00410266; iTF_00409265; iTF_00289596; iTF_00654268; iTF_00994333; iTF_00656126; iTF_00772862; iTF_00124252; iTF_01425916; iTF_00931389; iTF_01534814; iTF_00039807; iTF_01245919;
90% Identity
iTF_00810048;
80% Identity
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