Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.1e-10 9.7e-08 32.2 0.1 1 42 14 55 14 58 0.94

2 2 6 5.2e+03 -2.2 0.0 15 23 128 135 126 136 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.1e-10	9.7e-08	32.2	0.1	1	42	14	55	14	58	0.94
2	2	6	5.2e+03	-2.2	0.0	15	23	128	135	126	136	0.83

Coding Sequence: ATGCCTCgtgcttatttaaaaaagaaaaataaaacatacactCCTCAAGATTTAGCCACTGCCATACAGAAGGTAAGAAATGGGGAGCTTACCGCATATGCTGCTGCACAGAAGTACAAGATTCCAATGACCACTCTTCATGACCATGTCAAAACTAAAGAGACTATTAGACAGAATGCAGGTAGACCAATTGTTCTACCTTTAGAAGACGAAAAAAAGTTAGCAAGCACCATCATAGTCATGGAGAAATGGGGATTTGGGCTCTCAAGATCAGAAATATTGGAGATTGTGGCTGAATATGTGCGCGTAAACAATATTCAGACACCATTTAAGAATAACACGCCTGGACCTGATTGGTTTATTAACTTCCGAAAACGTCACGGTTTGTCCATCAAAAAAGCACAACCCGTAGAATATGTGCGAAGAAAAATGACAGATCCATTCGTCATTGCTGAATATTTTGATTTGCTGAATAAGACCTTACAAGATTTAAATCTTTTAGAAAATCCAGAATCGATTTGGAACTTGGACGAGACATCATTGTGTCTGGATCCGACCAAAACAAAAGTGGTcggacaaaaaaataaaccatgTGCGAGGACCACCTATGgaagtggaaaagaaaacatcaCTGTGTTAGCAGGAGCGAGTGCTAGTGGTAAAAAGTTGCCGCCTTTAATAGTTTTCAAAGGAAAATTTGTTTGGGACCAATGGATGGCTGATcttaatgatgatgattacgATTTCGAATTAACATATGCTGCAAGTACTAAAGGGTGGATGGAAACAGAAATGTTTACAATTATTTCGAAAAAGTACTCATCCCAAGTCTCGGCGAAGAGCGACCAGCTCTTATAA
Protein Sequence: MPRAYLKKKNKTYTPQDLATAIQKVRNGELTAYAAAQKYKIPMTTLHDHVKTKETIRQNAGRPIVLPLEDEKKLASTIIVMEKWGFGLSRSEILEIVAEYVRVNNIQTPFKNNTPGPDWFINFRKRHGLSIKKAQPVEYVRRKMTDPFVIAEYFDLLNKTLQDLNLLENPESIWNLDETSLCLDPTKTKVVGQKNKPCARTTYGSGKENITVLAGASASGKKLPPLIVFKGKFVWDQWMADLNDDDYDFELTYAASTKGWMETEMFTIISKKYSSQVSAKSDQLL

Sequence clustering based on sequence similarity using MMseqs2