Dmen007745.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- -
- Assembly
- GCA_949316265.1
- Location
- OX438889.1:20889711-20890640[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-09 1.5e-06 29.4 0.0 4 42 17 55 14 58 0.92
Sequence Information
- Coding Sequence
- ATGCCtcgtacttatttaaaaaagaaaaataaaacatacacgTCTCAAGATTTAGCCACTGCCATACAGAAAGTAAGAAATGGGGAGCTTACCGCATATGCTGCTGCACAGAAGTACAAGATTCCAATGACCACTCTTCATGACCATGTCAAAACTAAAGATACTCTTAGACAGAATGCAGGTAGACCAATAATTGTTCTACCTTTAGAAGACGAAAAAAAGTTAGCAAGCACCATCATTGTCATGGAGAAATGGCGATTTGGGCTCTCAAGATCAGAAATATTGGAGATTGTGGCTGAATATGTGCGCGTAAACAATATTCAGACACCATTTAAGAATAACACGCCTGGACCAGATTGGTTTATCAACTTCCGAAAACGTCACGGTTTGTCCATCAAAAAAGCACAACCCGTAGAATATGTGCGAAGAAAAATGATTGATTTGCTGAATAAGACCTTACAAGATTTAAATCTTTTAGAAAATCCACAATCGATTTGGAACTTGGACGAAACATCATTGTGTCTGGATCCGACCAAAACAAAAGTGgtcgaaaaaataaataaaccatgTGCAAGGACCACCTATGGAAGTGGAAAGGAAAACATCACTGTGTTAGCAAGAGCGAGTGCCAGTGGTAAAACGTTGCCACctttgattattttcaaaggaAAATTTGTTTGGGACCAATGGATGGCTGATCTTAATAAAGATGATTACGATTTCGAATTGACATATGCTGCAAGTAGTAAAAGTTGGATGGAAACAGAAATTTTTCACAATTATTTCGAAAAAGTACTCATCCCAAGTCTCGGCGAAGAGCGACCAGCCCTTATAATTTATGACGGGCATTCAACGCACGTCGATGCCAGGGTTGTGGAGCTTGCGGTCCGAAACAATGTAACTATCCTCAAATTACCCCCACATACATAA
- Protein Sequence
- MPRTYLKKKNKTYTSQDLATAIQKVRNGELTAYAAAQKYKIPMTTLHDHVKTKDTLRQNAGRPIIVLPLEDEKKLASTIIVMEKWRFGLSRSEILEIVAEYVRVNNIQTPFKNNTPGPDWFINFRKRHGLSIKKAQPVEYVRRKMIDLLNKTLQDLNLLENPQSIWNLDETSLCLDPTKTKVVEKINKPCARTTYGSGKENITVLARASASGKTLPPLIIFKGKFVWDQWMADLNKDDYDFELTYAASSKSWMETEIFHNYFEKVLIPSLGEERPALIIYDGHSTHVDARVVELAVRNNVTILKLPPHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00821725;
- 90% Identity
- iTF_01264434; iTF_01534756; iTF_01264426; iTF_01264437; iTF_00821725; iTF_00809994; iTF_01221462;
- 80% Identity
- -