Hamb014487.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- znf711
- Assembly
- GCA_949774945.1
- Location
- OX458976.1:14420889-14422301[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0002 2.8 8.7 2.2 14 31 145 162 139 167 0.88 2 6 1.7e-05 0.24 12.2 0.8 9 49 167 208 162 211 0.88 3 6 0.00086 12 6.7 0.1 21 44 240 263 232 271 0.85 4 6 2.3e-05 0.32 11.8 0.1 26 46 301 321 294 325 0.90 5 6 0.19 2.6e+03 -0.8 0.0 19 31 350 362 347 375 0.84 6 6 0.0037 51 4.7 0.1 19 48 375 404 362 407 0.89
Sequence Information
- Coding Sequence
- atggaaaataaaagatGTAGAACGTGTTGTCAGAATAACGCCACTTCCTACATTTTTAGTCAAGAAATTAACGAAATAGCGCTAAGCGctaaaataatgtattgttgttcaaatgttaatattatagaCGGAGATGGACTTCCAGTACATATATGTGATAGCTGCGAAAAAGAGCTGGCAGCCTGTTACCAATTTGTACTAAAATGTGAAGCTTCTGATAAGAAATTAAGACTAATTTCCCAAGTTATCACAGATATAGGTGACTGCTTGCCGAAAACTGAAGTAAAAGTAGAACAGAACGATCACAGCGAGGATGACCTTTACGAAGACTTACAGAGCGATGACATAACTCTTGAACAAATTAAGCAAGATGAATTAGAAATTAAATTGGAAAGTGTAGATTCAACGATAACCCCCAAACGTAAACCATACAAACAGAGATCTAAATACAAAGGTACGAAGCCATGTACATGCCCGATTTGTGGACGAATATGTGCTAACCCATCCACTGCCAAGATACACATGAGATCCCATACCAATGAAAAACCATACCTGTGTCCTTCATGTGATAAAAGATACAAGGACAGAGGTACTCTTAAACGCCACATTGAAAGAAACCATATACAGCAGAATCGGCAGCGaaactttatttgtgaaaactgtggcaaaggcttcttctctaAGAATGATGTGAAGGTTCATATGCGTACACACACTGGAGAAACACCATATGGCTGTCCAGTATGCACCCTCAGGTTCACACAGATCAGTGCATTACAAAGACATAAAAAACGACACACTGGTGAGAAGGACCACTTATGCACAACTTGCCCAAAGAGATTTTGTACTAAACAAGAACTGAAAAGCCACCTCCTGGTACACAGTACTACGAAGAGCTATCCTTGTCCTATCTGTAATGTGTTATTCAAGTACCAAAACAATTTACGGAAACATGTGAAACTGCATTCAGAACCAAATAGATTTGTGTGTAACCACTGTGGACGTAGATTTAATGTGAAGGGGAACCTAAAGATCCACATTGACAAGCAACATTCTGAGAAATCTGGCAACTGTAATATTTGTTCCAAAAATGTTGCCGATATTGAGGTACACATGTGGAGACATACAGGTCAAAGACCTCTGAAATGTGAGGTCTGTACAAGCAGCTTTTATGAACTGAAGGCTTTAGCTCGTCATATgaactataaacataacaaaactgaTAGATATAAGTGTGAAGCTGAAGGCTGTTTGATGATGTTTCCATCTAGACCTATGCTGGACTTCCATACTGCTAAGCTACACAGTACTCACATTCCATTCCCATGTGACAGGTGCTCAAGAGCATTTTATAGGAAAAATGATCTAGCCAGACACAAAATTGCTACTCATAAAGAGAGACTTATTAAGTAG
- Protein Sequence
- MENKRCRTCCQNNATSYIFSQEINEIALSAKIMYCCSNVNIIDGDGLPVHICDSCEKELAACYQFVLKCEASDKKLRLISQVITDIGDCLPKTEVKVEQNDHSEDDLYEDLQSDDITLEQIKQDELEIKLESVDSTITPKRKPYKQRSKYKGTKPCTCPICGRICANPSTAKIHMRSHTNEKPYLCPSCDKRYKDRGTLKRHIERNHIQQNRQRNFICENCGKGFFSKNDVKVHMRTHTGETPYGCPVCTLRFTQISALQRHKKRHTGEKDHLCTTCPKRFCTKQELKSHLLVHSTTKSYPCPICNVLFKYQNNLRKHVKLHSEPNRFVCNHCGRRFNVKGNLKIHIDKQHSEKSGNCNICSKNVADIEVHMWRHTGQRPLKCEVCTSSFYELKALARHMNYKHNKTDRYKCEAEGCLMMFPSRPMLDFHTAKLHSTHIPFPCDRCSRAFYRKNDLARHKIATHKERLIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00809416; iTF_00121702; iTF_00124531; iTF_00122680; iTF_00123610; iTF_00274634; iTF_00273844; iTF_00177426;
- 90% Identity
- iTF_00809416;
- 80% Identity
- iTF_00809416;