Acre020267.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451366.1:18575515-18576927[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1e-05 0.00091 20.5 3.9 2 23 159 180 158 180 0.96 2 10 1.4e-05 0.0012 20.1 0.4 1 23 186 209 186 209 0.96 3 10 2.7e-06 0.00024 22.3 0.7 1 23 217 239 217 239 0.98 4 10 0.00015 0.013 16.9 1.1 3 23 247 267 245 267 0.97 5 10 0.00039 0.036 15.5 3.4 3 23 275 295 273 295 0.95 6 10 2.5e-05 0.0023 19.3 1.0 1 23 301 323 301 323 0.98 7 10 9.6e-07 8.7e-05 23.7 1.4 1 23 329 352 329 352 0.96 8 10 0.0098 0.9 11.1 0.7 2 23 383 405 382 405 0.94 9 10 6.4 5.8e+02 2.3 0.2 1 17 411 429 411 436 0.81 10 10 0.00035 0.032 15.7 0.6 1 23 442 465 442 465 0.91
Sequence Information
- Coding Sequence
- ATGGATAGAAAACTATGCAGATTGTGTTGTGAAAATGAAGCTACTTCCTACATTTTTAGTAGAGGAACTAATGATATTGCAGTAAACGcaaaaataatgtattgttGTTCAAATGTAATTATTAAAGACGGGGATGGGCTTCCATCTCATATTTGTGAAAGCTGCGAAAAAGAGCTCGCAGCCTGCTACCAATTTGTTCTAAAATGCGAAGCTTCTGATAAGAAATTAAGATCTCAAGGTTTTGAAGTATTTTCCCAAGTTATCGCAGATTTCGACCACTGCTCGCCGAAAACTGAAGTAAAACTTGAATTGGACTGTAACAGCGACGATGATCACCTTTATGAGCATTTACAAAACGACACTCTTGAACAAATAAGCCgaaataaattagaaataaaattggaaaatgTAGAATCTAAAATAACCCCCAAACGAAAACCGTACAAACAAAGATTCAAAAGTCTGGAGCCATGTACTTGCTCAGTTTGTGGCCGAACGTGTGCTAACCCGTCAGCCTTTAAGACACACATGAGATCCCATACTAATGAGAAACCATATGCTTGTCCTTTATGTGATAAGAAGTACAAAGACGGTGGTACTCTCAAACGACACATGGACAGAAATCACCAACAGAAGCGGCAGCGCAACTTCATTTGCGAAAACTGTGGCAAAGGCTTCTTCTCTAAGAATGATGTGAAGGTTCATATGCGTACACACACTGGGGAAACTCCATATGGTTGCTCCATATGCACTCTCAGATTCACTCAGATCAGTGCATTACAAAGACATAAGAAACGACACACTGGTGAAAAGGATCACTTGTGCACAGCTTGTCCAAAGAGGTTTTGTACCAAGGAAGAACTAAAAAGTCACCTCTTGGTACACAGTAATGAGAAAAACTACTCTTGCCCTCTCTGTAATGTATTATTTAAGTACCAAAACAATTTGAGGAAACATGTGAGACTGCACTCGGAACCCAATAGATTTGTCTGCAACCACTGTGGACGTACATTCAATGTTAAGGGGAACCTGAAGATTCACATTGACAAGCAACATTCTGAGAAATCCGGTCACTGCACTGTTTGTTCAAAAAATGTTGCAAATATTGAGGTACACATGTGGAGACATACAGGACAAAGACCATTGAAATGTGAGCTCTGTACAAGCAGCTTTTATGAACTGAAGGCTTTGGCTCGGCACATGAACTTTAGACATAAGAAAACTGATAGATTTAAGTGTACAGTTGAAGGGTGTTTGATGACGTTCCCATCCAGACCGATGCTCGACTTCCATACTGCTAAGCTTCATGGTACTCACATCCCGTTTCCATGTGACAGGTGCACAAGAGCATTTTATAGGAAGAATGATCTTGCCAGACATAAAATTGGCACACACAAAGAGAGACTCATTTAA
- Protein Sequence
- MDRKLCRLCCENEATSYIFSRGTNDIAVNAKIMYCCSNVIIKDGDGLPSHICESCEKELAACYQFVLKCEASDKKLRSQGFEVFSQVIADFDHCSPKTEVKLELDCNSDDDHLYEHLQNDTLEQISRNKLEIKLENVESKITPKRKPYKQRFKSLEPCTCSVCGRTCANPSAFKTHMRSHTNEKPYACPLCDKKYKDGGTLKRHMDRNHQQKRQRNFICENCGKGFFSKNDVKVHMRTHTGETPYGCSICTLRFTQISALQRHKKRHTGEKDHLCTACPKRFCTKEELKSHLLVHSNEKNYSCPLCNVLFKYQNNLRKHVRLHSEPNRFVCNHCGRTFNVKGNLKIHIDKQHSEKSGHCTVCSKNVANIEVHMWRHTGQRPLKCELCTSSFYELKALARHMNFRHKKTDRFKCTVEGCLMTFPSRPMLDFHTAKLHGTHIPFPCDRCTRAFYRKNDLARHKIGTHKERLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00809714;
- 90% Identity
- iTF_00374497; iTF_01340482; iTF_01339272; iTF_00746066; iTF_00238037; iTF_00147843; iTF_01441318; iTF_01247399; iTF_00120795;
- 80% Identity
- -