Hpse021245.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_947369225.1
- Location
- OX376312.1:15444524-15446125[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00077 18 5.9 0.0 26 48 68 90 65 96 0.89 2 11 0.032 7.7e+02 0.7 0.1 19 45 91 117 89 124 0.83 3 11 0.24 5.6e+03 -2.0 0.1 21 44 122 145 110 152 0.75 4 11 1.3e-06 0.03 14.8 0.2 22 51 153 182 147 186 0.87 5 11 0.022 5.3e+02 1.2 0.0 24 48 185 209 181 212 0.88 6 11 0.008 1.9e+02 2.7 0.0 21 44 240 263 232 268 0.85 7 11 0.00023 5.4 7.6 0.5 16 48 303 335 300 337 0.88 8 11 7.6e-07 0.018 15.5 1.3 19 48 334 363 332 366 0.93 9 11 0.0017 41 4.8 0.4 22 48 367 393 364 398 0.88 10 11 0.38 8.9e+03 -2.7 0.1 24 31 398 405 393 419 0.79 11 11 0.4 9.4e+03 -2.8 0.1 27 45 429 447 423 450 0.80
Sequence Information
- Coding Sequence
- ATGGATGAAGAAGTTGAACAAATATTCGTGAAACCAGATTTATCAGCAATAAGTCTCGAAGTCAAAGTCGAAAACGAAGAAAACCCCCATCAAGATGCTGAAACAGCATTCGGCATTAAAGAGGAAAGCCAGCATTTCTTGGACGAATTTAGAAACAGAGATATTGGAAAAGTGTATGAGAACGGTAAAATAAATAGAGTTGGATGTCCGGAGTGTGACAGTACGTTCAAAAACAGAGCAAATTTAAAGAAGCATCTAAAATACGTACATTCTACAGAAGAGGACGTCGTTGAATGTACACAGTGCTACCGCACTTTTAAATCTATCAGTCATCTACGCTCTCACACCAGCTCTGTACATGCAGATGAGAAGCTAATGACATGTGAAACCTGTCTAAAGACGTTTTCGAACAAGAAACGACTCGACAATCACGTTTTCTATGCCCACCCAAAGCCAGAAGAGACTGTGACTTGTCAAATATGTTATAAAACCTTCAAACAGCAATACAACTTGAAAATACACATGCGTCAAGTGCATCCTTCAAAAGACAGTTCTGTTACCTGTGAGCATTGCAACAAGATTTTTAAAAACGATATGTTGCTGCAAAGGCATGTCAAATGGAGTCACCCGTCTGATGGATTGATATACAAATGTCAAGAATGTGGCCGGAGTCTACCATCCTTAGCTTGTTACAAGAAACACATCCAAAACGTCCATTCGAGTAACAATGTCAGTTGCCTGATATGCTTCAAAACATTCAAGACTTTGAAAACCCTTCATAGACATGAAAAAAACATACACGGAGGTGGGAAAATTGAATCAAAACAGTATAAGCAAGGGGAATTTAAATGCACTGAGTGTGATAAACAGTTTTCTAATAACACATCTTTGACATGGCACTTTGAAAGGAATCATTCAGAGAATAAAAGGAGCAGCTACTGTGAGATTTGCCAAAAGGAACTTTCAGATCACGCCAGCTTAAAACGGCATTTAGAAACGTCGCACTCTTCACAGACTGCCGCTTGCCACATCTGCCACAAGATCTTCAAATCACCTATCAACTTGCAGAGGCATATTCGGGTAACCCACGCTCCGCCTGAAGCGTCTCAAACCTGTGATATTTGCAACAAATCATACAAATGTTCAATGCATTTGCGAATACATATCAATACCGTACATCCAAAAGAAGGTTCTTTCACTTGCGATATTTGCAACAAACAATTTCTATCCAAGAAATACATGTTGAAACATAGAAAAATCCATGTAGCAAGTAAAGAATTCCCATGCCATCTATGTCACAAATTGTACAAATCACAGAACGATGTGAAAAAGCATATGAAGAGAGTACATAATATTCTAATGTACAATTTGAATAAATGTACAGTGTGCAATACAGAATTTTCGAGTCAGTACACTTTAGAAGAACACAGAAAGAAAATGCATAGCACTGAAGAGGCCTCGAGTAAAAGTAAAAGCTGTACTAAATGTGGTACAAACTTTTTGAATGATGAAGACCTACATTCTCATATTTTGAAGTGTGGAAGTGAGATTGGGATAGTTAGCCACATTAAAATTGAGATAGATGAAGAATTTTCATCCTAA
- Protein Sequence
- MDEEVEQIFVKPDLSAISLEVKVENEENPHQDAETAFGIKEESQHFLDEFRNRDIGKVYENGKINRVGCPECDSTFKNRANLKKHLKYVHSTEEDVVECTQCYRTFKSISHLRSHTSSVHADEKLMTCETCLKTFSNKKRLDNHVFYAHPKPEETVTCQICYKTFKQQYNLKIHMRQVHPSKDSSVTCEHCNKIFKNDMLLQRHVKWSHPSDGLIYKCQECGRSLPSLACYKKHIQNVHSSNNVSCLICFKTFKTLKTLHRHEKNIHGGGKIESKQYKQGEFKCTECDKQFSNNTSLTWHFERNHSENKRSSYCEICQKELSDHASLKRHLETSHSSQTAACHICHKIFKSPINLQRHIRVTHAPPEASQTCDICNKSYKCSMHLRIHINTVHPKEGSFTCDICNKQFLSKKYMLKHRKIHVASKEFPCHLCHKLYKSQNDVKKHMKRVHNILMYNLNKCTVCNTEFSSQYTLEEHRKKMHSTEEASSKSKSCTKCGTNFLNDEDLHSHILKCGSEIGIVSHIKIEIDEEFSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00806959;
- 90% Identity
- iTF_00806959;
- 80% Identity
- iTF_00806959;