Basic Information

Insect: Hofmannophila pseudospretella
Gene Symbol: -
Assembly: GCA_947369225.1
Location: OX376312.1:15444524-15446125[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9.2e-06 0.00059 20.5 0.9 3 23 69 90 69 90 0.97

2 15 0.00041 0.026 15.3 2.5 2 23 98 120 97 120 0.95

3 15 0.013 0.84 10.6 1.3 2 23 127 149 126 149 0.90

4 15 2.6e-07 1.6e-05 25.4 1.3 2 23 157 179 156 179 0.96

5 15 0.00016 0.01 16.6 1.5 2 23 187 209 186 209 0.95

6 15 0.00027 0.017 15.9 1.3 1 23 216 239 216 239 0.97

7 15 0.0016 0.1 13.5 3.1 2 23 245 267 244 267 0.94

8 15 7.8e-06 0.0005 20.8 2.1 1 23 282 305 282 305 0.95

9 15 0.00027 0.017 15.9 1.1 2 23 313 335 312 335 0.96

10 15 7.6e-07 4.9e-05 23.9 2.4 3 23 342 363 341 363 0.97

11 15 0.0022 0.14 13.0 4.0 2 23 371 393 370 393 0.97

12 15 0.0035 0.23 12.4 3.0 1 23 399 421 399 421 0.98

13 15 0.00065 0.042 14.7 5.3 1 23 427 450 427 450 0.97

14 15 6.7e-05 0.0043 17.8 1.6 2 23 459 481 458 481 0.97

15 15 0.31 20 6.3 0.7 2 21 492 511 491 512 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9.2e-06	0.00059	20.5	0.9	3	23	69	90	69	90	0.97
2	15	0.00041	0.026	15.3	2.5	2	23	98	120	97	120	0.95
3	15	0.013	0.84	10.6	1.3	2	23	127	149	126	149	0.90
4	15	2.6e-07	1.6e-05	25.4	1.3	2	23	157	179	156	179	0.96
5	15	0.00016	0.01	16.6	1.5	2	23	187	209	186	209	0.95
6	15	0.00027	0.017	15.9	1.3	1	23	216	239	216	239	0.97
7	15	0.0016	0.1	13.5	3.1	2	23	245	267	244	267	0.94
8	15	7.8e-06	0.0005	20.8	2.1	1	23	282	305	282	305	0.95
9	15	0.00027	0.017	15.9	1.1	2	23	313	335	312	335	0.96
10	15	7.6e-07	4.9e-05	23.9	2.4	3	23	342	363	341	363	0.97
11	15	0.0022	0.14	13.0	4.0	2	23	371	393	370	393	0.97
12	15	0.0035	0.23	12.4	3.0	1	23	399	421	399	421	0.98
13	15	0.00065	0.042	14.7	5.3	1	23	427	450	427	450	0.97
14	15	6.7e-05	0.0043	17.8	1.6	2	23	459	481	458	481	0.97
15	15	0.31	20	6.3	0.7	2	21	492	511	491	512	0.91

Sequence Information

Coding Sequence: ATGGATGAAGAAGTTGAACAAATATTCGTGAAACCAGATTTATCAGCAATAAGTCTCGAAGTCAAAGTCGAAAACGAAGAAAACCCCCATCAAGATGCTGAAACAGCATTCGGCATTAAAGAGGAAAGCCAGCATTTCTTGGACGAATTTAGAAACAGAGATATTGGAAAAGTGTATGAGAACGGTAAAATAAATAGAGTTGGATGTCCGGAGTGTGACAGTACGTTCAAAAACAGAGCAAATTTAAAGAAGCATCTAAAATACGTACATTCTACAGAAGAGGACGTCGTTGAATGTACACAGTGCTACCGCACTTTTAAATCTATCAGTCATCTACGCTCTCACACCAGCTCTGTACATGCAGATGAGAAGCTAATGACATGTGAAACCTGTCTAAAGACGTTTTCGAACAAGAAACGACTCGACAATCACGTTTTCTATGCCCACCCAAAGCCAGAAGAGACTGTGACTTGTCAAATATGTTATAAAACCTTCAAACAGCAATACAACTTGAAAATACACATGCGTCAAGTGCATCCTTCAAAAGACAGTTCTGTTACCTGTGAGCATTGCAACAAGATTTTTAAAAACGATATGTTGCTGCAAAGGCATGTCAAATGGAGTCACCCGTCTGATGGATTGATATACAAATGTCAAGAATGTGGCCGGAGTCTACCATCCTTAGCTTGTTACAAGAAACACATCCAAAACGTCCATTCGAGTAACAATGTCAGTTGCCTGATATGCTTCAAAACATTCAAGACTTTGAAAACCCTTCATAGACATGAAAAAAACATACACGGAGGTGGGAAAATTGAATCAAAACAGTATAAGCAAGGGGAATTTAAATGCACTGAGTGTGATAAACAGTTTTCTAATAACACATCTTTGACATGGCACTTTGAAAGGAATCATTCAGAGAATAAAAGGAGCAGCTACTGTGAGATTTGCCAAAAGGAACTTTCAGATCACGCCAGCTTAAAACGGCATTTAGAAACGTCGCACTCTTCACAGACTGCCGCTTGCCACATCTGCCACAAGATCTTCAAATCACCTATCAACTTGCAGAGGCATATTCGGGTAACCCACGCTCCGCCTGAAGCGTCTCAAACCTGTGATATTTGCAACAAATCATACAAATGTTCAATGCATTTGCGAATACATATCAATACCGTACATCCAAAAGAAGGTTCTTTCACTTGCGATATTTGCAACAAACAATTTCTATCCAAGAAATACATGTTGAAACATAGAAAAATCCATGTAGCAAGTAAAGAATTCCCATGCCATCTATGTCACAAATTGTACAAATCACAGAACGATGTGAAAAAGCATATGAAGAGAGTACATAATATTCTAATGTACAATTTGAATAAATGTACAGTGTGCAATACAGAATTTTCGAGTCAGTACACTTTAGAAGAACACAGAAAGAAAATGCATAGCACTGAAGAGGCCTCGAGTAAAAGTAAAAGCTGTACTAAATGTGGTACAAACTTTTTGAATGATGAAGACCTACATTCTCATATTTTGAAGTGTGGAAGTGAGATTGGGATAGTTAGCCACATTAAAATTGAGATAGATGAAGAATTTTCATCCTAA
Protein Sequence: MDEEVEQIFVKPDLSAISLEVKVENEENPHQDAETAFGIKEESQHFLDEFRNRDIGKVYENGKINRVGCPECDSTFKNRANLKKHLKYVHSTEEDVVECTQCYRTFKSISHLRSHTSSVHADEKLMTCETCLKTFSNKKRLDNHVFYAHPKPEETVTCQICYKTFKQQYNLKIHMRQVHPSKDSSVTCEHCNKIFKNDMLLQRHVKWSHPSDGLIYKCQECGRSLPSLACYKKHIQNVHSSNNVSCLICFKTFKTLKTLHRHEKNIHGGGKIESKQYKQGEFKCTECDKQFSNNTSLTWHFERNHSENKRSSYCEICQKELSDHASLKRHLETSHSSQTAACHICHKIFKSPINLQRHIRVTHAPPEASQTCDICNKSYKCSMHLRIHINTVHPKEGSFTCDICNKQFLSKKYMLKHRKIHVASKEFPCHLCHKLYKSQNDVKKHMKRVHNILMYNLNKCTVCNTEFSSQYTLEEHRKKMHSTEEASSKSKSCTKCGTNFLNDEDLHSHILKCGSEIGIVSHIKIEIDEEFSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00807307;
90% Identity: iTF_00807307;
80% Identity: iTF_00807307;