Hpse023384.1
Basic Information
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947369225.1
- Location
- OX376314.1:14509371-14521646[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-78 2.5e-74 250.7 21.9 1 269 49 313 49 331 0.88 2 3 1 2.4e+04 -7.2 16.6 1 44 332 375 332 396 0.73 3 3 0.1 2.4e+03 -2.1 3.3 211 236 384 408 369 411 0.54
Sequence Information
- Coding Sequence
- ATGTGGGAAGGTCACCATGGTCATAAACATTTGAGCTCAAACTCGAACCACATAACTGTTACCGTTCCAGAGATCCCATCATACTCCAACACGCCAAGATACTCCAAGATCTTAGAACTACTGATCCAATTTTCATCTGACAAGGCGGAGCAGCGGCTAGCAGCGCGACGCGCGGCGCGGGCGGAGGCGCGCGATATACGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTACGACATGTACACAGAGACGGTGACGCGGCGCGGCGGCCCGCGGCTGGCGGCGCTCAGTCCGGCCGTGCTGCACTCTCCGCGGAGGAGTTCCGAGGACTCTGCCGACGATACCTTCAGCATCAAGGACCTTCGGCACGAGCTAAAGGAGGTGGAGGAAAAGTTCCGAAAGGCGATGATTCTGAACGCACAGCTGGACAACGACAAAGCAGCCCTCGGATACCAGCTGGAACTGCTGAAAGACCGGATAGAGGAGCTGCACGAGGAATACGCACAACTACAGCGGGAGCACAAAGAAAAATGCTCAGCCCACGAGCGTTTAAAACGCGAGCACGCTTCTCTCGAGCGGGAACTGACAGGCGCGCGGGACGCGGTTCGAGCGCGGGACGCCGCCGCGAACGCCGCGGGATTCGCGTTCGTTGACGCGGCCGCCGCGACCGATGCGGTGGCCGAGACACCCGGCTTCGGCAGTGTGCCGCCGCTGGCGCTCGTGTCGCACCAGTCGGAGCAGATGTTGAGCGACGCCGGCGAGGGCACGCTAGACGTGCGGTTGCAGAAGCTGCTCTCAACTAAGCAAGGTCTAGAGTCGGAGGTGCGCAAGTTGAAGCTGCAGCTGAACGACGAGCGAGCGGCCAGGCAGAACGGGGTCGCTAACCACCACGACCAGGAGTTTGAGAACGAACTGGAGACGCTCCGCAAGTCTGTAGCGGAGGCGAAGGGGCGCGCGGCGCGGTCGGAGGCCGAGGCTGCACTGCAGGCGGCCGCCGTGGCCCGGCTCGAGGCGCAGGTGTCACGTCTGCGGGCCCGCCAAGAGCACCAGGACGAGCACGAGGAGCAGCTCAAGGCGGAGCGGAGACGGCTGCAGAGAGAGGCGCGGGAAGCCCTCAACAGAGTCGAGGAGTTGGAAACGGAAAACGGCCACTTGACCAAGCGCCTCGACAAACTGAAGAACGCCAAGTCTGCCTTACTAAAGGACCTGTGA
- Protein Sequence
- MWEGHHGHKHLSSNSNHITVTVPEIPSYSNTPRYSKILELLIQFSSDKAEQRLAARRAARAEARDIRMRELERQQREQEDHADKAYDMYTETVTRRGGPRLAALSPAVLHSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHASLERELTGARDAVRARDAAANAAGFAFVDAAAATDAVAETPGFGSVPPLALVSHQSEQMLSDAGEGTLDVRLQKLLSTKQGLESEVRKLKLQLNDERAARQNGVANHHDQEFENELETLRKSVAEAKGRAARSEAEAALQAAAVARLEAQVSRLRARQEHQDEHEEQLKAERRRLQREAREALNRVEELETENGHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00651756;
- 90% Identity
- -
- 80% Identity
- -