Basic Information

Insect: Hirtodrosophila confusa
Gene Symbol: -
Assembly: GCA_035043065.1
Location: JAWNNI010000135.1:383058-387059[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.2e-05 0.0035 18.2 3.3 1 23 219 242 219 242 0.94

2 17 0.0012 0.098 13.6 1.9 1 23 249 271 249 271 0.98

3 17 0.2 16 6.6 0.2 2 23 303 324 302 324 0.95

4 17 0.00097 0.08 13.9 2.0 1 23 415 438 415 438 0.97

5 17 0.077 6.3 7.9 0.5 1 19 445 463 445 466 0.93

6 17 0.0048 0.39 11.7 4.3 1 23 475 497 475 497 0.95

7 17 0.0011 0.09 13.7 0.5 1 23 504 527 504 527 0.95

8 17 0.00011 0.0087 16.9 1.2 2 23 535 556 534 556 0.96

9 17 0.035 2.8 9.0 0.1 2 21 583 602 582 603 0.94

10 17 0.015 1.2 10.1 2.2 1 23 654 677 654 677 0.96

11 17 0.013 1.1 10.3 0.2 1 23 714 737 714 737 0.94

12 17 0.00016 0.013 16.4 1.6 2 23 776 798 775 798 0.95

13 17 0.001 0.082 13.9 0.3 1 23 812 834 812 834 0.95

14 17 0.00013 0.011 16.6 1.2 1 23 840 862 840 862 0.99

15 17 4.1e-07 3.4e-05 24.5 2.6 1 23 868 890 868 890 0.98

16 17 1.3e-05 0.0011 19.7 3.8 1 23 896 918 896 918 0.97

17 17 0.0025 0.21 12.6 0.2 1 23 924 948 924 948 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.2e-05	0.0035	18.2	3.3	1	23	219	242	219	242	0.94
2	17	0.0012	0.098	13.6	1.9	1	23	249	271	249	271	0.98
3	17	0.2	16	6.6	0.2	2	23	303	324	302	324	0.95
4	17	0.00097	0.08	13.9	2.0	1	23	415	438	415	438	0.97
5	17	0.077	6.3	7.9	0.5	1	19	445	463	445	466	0.93
6	17	0.0048	0.39	11.7	4.3	1	23	475	497	475	497	0.95
7	17	0.0011	0.09	13.7	0.5	1	23	504	527	504	527	0.95
8	17	0.00011	0.0087	16.9	1.2	2	23	535	556	534	556	0.96
9	17	0.035	2.8	9.0	0.1	2	21	583	602	582	603	0.94
10	17	0.015	1.2	10.1	2.2	1	23	654	677	654	677	0.96
11	17	0.013	1.1	10.3	0.2	1	23	714	737	714	737	0.94
12	17	0.00016	0.013	16.4	1.6	2	23	776	798	775	798	0.95
13	17	0.001	0.082	13.9	0.3	1	23	812	834	812	834	0.95
14	17	0.00013	0.011	16.6	1.2	1	23	840	862	840	862	0.99
15	17	4.1e-07	3.4e-05	24.5	2.6	1	23	868	890	868	890	0.98
16	17	1.3e-05	0.0011	19.7	3.8	1	23	896	918	896	918	0.97
17	17	0.0025	0.21	12.6	0.2	1	23	924	948	924	948	0.90

Sequence Information

Coding Sequence: ATGAAGCTGCCCGTTATCTGTCGCACTTGCGATTCAAGGGAGACGGATAAGTTGTATAAGTTGGCTACCTACACGAAAAAGTTTCCGAACAAGCAGCTCTCCGACATTTTAGCCGAATTGACCCACATAGAATCGGACGTTTCTATGGTACAGCAGCTGCCGCAATGTTTGTGCGGCACCTGCGCTAGAAAGCTAATCGGCGCCTATTACTACGTCAAACAGGCGCTGGCCGCCCATGAGCTCTTGATGAACCATGTGGAGGATGGCGACAAAGCGGCGCTCACCGACTGCCTGCAGGAGGTGCCAATGGAGCTTTGCGCCGAGCAGCACGTGGAGATTAAATTGGAAACAGAGGATGAGGATGCTGATAATGATATAACCTGCACGGAGCTGCCCGAGTTTACAACAATGCAAAATGCGAATGAGGTGGATATAGCAGTGGATGAAGATCTAGATAACAAGAAGTCGACCGATCCACTAACAATGCTCGATATAGTTAAACAGGAGGAGGATGCCGCTGGTCGAGCAACAAAAGCGCAGGAACACGAAAAGGCTGATCATGACGAAGAAGATTCTCTCGATGATTTGCCTTTACAACAGCGCGTCCATAAGTGGAAACAGAAGGACAAAATTCGCACATTCAAAAGGCAGATATTCAAATGCCATGAATGCCCCAAGAGTTTTAAACGTGTTGAATATTTGAAACAACATTCAACGCGCGCCCATAAATCAAAAACCGATTGGTTCTCATGCTCCTTCTGTATACGAAAGTTCAGCCACAGCGAAGCGCTACAGGCCCATCTAAAGGTCCATAGGGACTCCAAGCGGTCAGCCAATTTAGGTGAGAGTAAAAAGGCCAAAGATATTGATGTGAACGTATGCAAGCCGCATGGCTATAAGCTCATCGAGTGTATGATCTGCCAGAGTCAATATGATAAGATAGCGGACTTGCGACGTCATCTGCAGCAACATCCAGAGATTGTTAGCTTTGGTGCGCGCTCCAATATGCAGCCAAATGAGCTGGCTGAGCTGTTTTACCCCGATGCCAAGGATGTGAGCGAGGAACAACTGAAGGTCCTCATACGCAAAGATTTGGCAGCTGGCATCTATCAGCGTTTCTATTCGATTACGAACCAGTCGGGCTATGAAATGGATTTGGACAGCTCAGAAACGGAGAGCGAAGCTGAACTGGATGGCGAGGAGCAGTCAAAACAACAGAGGACCATACCCAAAGCAAGCTACTATAGCTGTGAACTGTGCCAAGAGCGTTACCAACGCAAATATCAGCTATACGAACATCAACGTCTAACACACGCCTGGCAGGAGGCGCCACATGTGTGCGGTCGCTGCGATGCGCGCTTTGTTagcctgcagctgctgcgacATCATAACGAGTCGCAGTGCAAGAATGCGCAAAAACGTTTCCTGTGCCACAAATGTCCGCTACGCTTCCGCTGGCGGCACAATCTGAAAGTGCACATACGCGAGCACCGTATCACCAATCAAACATATGAGTGTATCGATTGCAAGCGTGTCTTTGATAAAAAGAAATCCTTGACGGTTCACTTGCTTAGTGTGCATGCCGAGCAATCGAAGCTGATACCATGTCAATGGTGCACTCGCAAGTTTTATCGTCGCGACTATCTGGTGAAGCATCTGAAGCGTCACGGCATTCGCGAGCAGGACATACCGCTCGCCGAGACGCTTATTGCGGCCACATCGAAGCCCAACGGCGCCAAACACATCACCTGCAAAATATGCAGCCTGCAGTTTGAGCGTATCATCGATCTGCGTTCCCATATTCAGCTGGAACTGAAGCTGGCGCTATCACCACACCAGAACTATGATTCGCCGCATAACTACTCCATAACGAATGACTCCGGCTACGAAATGCAGCTCAACGACTCAGAGACTGAGGATGAAATGATGATGCAGTCCACTACCCCCGCACGCCTTGCCTACGTTTGCGAGCTGTGCAAAGTGCAATGCAAGCGCAAGTTCGAAATGATTCAACATCAGCGTGCCATGCATCGCTTCGACAAGATGCCGCATGAGTGCGAactatgcatatttaaatgcgTCTGCAAGAGCATTATGGAACAGCATAGAGAATCACAGTGCCACAGTGCTGAGAAGAAGTATGCGTGCAGCAGATGCGGCTACAAATTCATGTGGCCCGAGAATCTGCAACAGCatgtgcaactgcaacatggCGGAATTGCAGGTACACTGGCCGATGCTAGCGAAGCAGTAAGCGCTGATCGCTTACCAACTGATCCTGCTGATCCAGCAGCTGGTGTACCGGCGGATGGCGTACAGCTACTGCAATGCCCGCACTGTGATCGTACATATCAAATGAAGTCTAGACTCAACAATCATATACGGGATGTGCACATCAATGGCGATCGGAAGCGGAAGGAGGCCATTAAGAAGTTCCTATGCTCGCTGTGTGGCCGTGAAACGCAATCGGCGGCTACTCTGGTTACCCACATGCGTCGCCATACGGGCGAGAAGCCATTTAAATGCGATCTGTGTGAGATGGCATTCCCGCGACACTCGGAAATGATATCACATCGCAGAATGCACACTGGGGAGAAACCATTCCATTGCACTGTTTGTGGCAAGGATTTTGCGCGCTCCGACAAACTAAAAAGGCACATGCTAACCCACAGTGGTCTGAAACCGCATAAGTGCACATACTGCGATAAGAGCTATCGCCAGGCCAAGGAtctaaaattgcatttgcaacaGCACACCGGTGAGTGCCCATTTATATGTGGCACATGCGGCGAGCGCTTCATTCAGGGCACAGCGCTGGAGAAGCATCGCATGATGCGGCGTCATTTTGACGAGGTGGAGGAACGTAGCACAACTACACTAACTACATAA
Protein Sequence: MKLPVICRTCDSRETDKLYKLATYTKKFPNKQLSDILAELTHIESDVSMVQQLPQCLCGTCARKLIGAYYYVKQALAAHELLMNHVEDGDKAALTDCLQEVPMELCAEQHVEIKLETEDEDADNDITCTELPEFTTMQNANEVDIAVDEDLDNKKSTDPLTMLDIVKQEEDAAGRATKAQEHEKADHDEEDSLDDLPLQQRVHKWKQKDKIRTFKRQIFKCHECPKSFKRVEYLKQHSTRAHKSKTDWFSCSFCIRKFSHSEALQAHLKVHRDSKRSANLGESKKAKDIDVNVCKPHGYKLIECMICQSQYDKIADLRRHLQQHPEIVSFGARSNMQPNELAELFYPDAKDVSEEQLKVLIRKDLAAGIYQRFYSITNQSGYEMDLDSSETESEAELDGEEQSKQQRTIPKASYYSCELCQERYQRKYQLYEHQRLTHAWQEAPHVCGRCDARFVSLQLLRHHNESQCKNAQKRFLCHKCPLRFRWRHNLKVHIREHRITNQTYECIDCKRVFDKKKSLTVHLLSVHAEQSKLIPCQWCTRKFYRRDYLVKHLKRHGIREQDIPLAETLIAATSKPNGAKHITCKICSLQFERIIDLRSHIQLELKLALSPHQNYDSPHNYSITNDSGYEMQLNDSETEDEMMMQSTTPARLAYVCELCKVQCKRKFEMIQHQRAMHRFDKMPHECELCIFKCVCKSIMEQHRESQCHSAEKKYACSRCGYKFMWPENLQQHVQLQHGGIAGTLADASEAVSADRLPTDPADPAAGVPADGVQLLQCPHCDRTYQMKSRLNNHIRDVHINGDRKRKEAIKKFLCSLCGRETQSAATLVTHMRRHTGEKPFKCDLCEMAFPRHSEMISHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCDKSYRQAKDLKLHLQQHTGECPFICGTCGERFIQGTALEKHRMMRRHFDEVEERSTTTLTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00519319;
90% Identity: iTF_00805338;
80% Identity: -