Hcon003133.1
Basic Information
- Insect
- Hirtodrosophila confusa
- Gene Symbol
- MBD2_1
- Assembly
- GCA_035043065.1
- Location
- JAWNNI010000036.1:87094-89295[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-22 3.8e-19 68.5 0.0 1 74 9 77 9 80 0.93 2 2 3.9e-05 0.098 12.7 0.0 27 76 179 237 159 238 0.89
Sequence Information
- Coding Sequence
- ATGCAAATGAATCCGAGCATTACAATCGAACGAAAACGCGTTGATTGCAGCGCACTACCAAAAGGCTGGCAGCGCGAGGAAGTTCATAGAAAATCGGCCTGCAACTCGGGCGTTGATGTTTTCTACTACAGCCCTACAGGCAAAAGAATCGAAAGCAAACCACAGCTAGCACGTCAATTAAACGCCGAGATGTTTGACATAAGTAACTTTGATTTTCAAACCGGcaaaatgcaactgcaaaggCAAATGCCCTCGCCATCCATATCGCTCTATCGTTGCAATGCGGCTGGCGCCATTATCGGCAATGCTGGCCCAGGTGGCAACTCAGTCAATGCGCTCAAACGTAAATATAGCAGGGCTCAAACTCTAAGCtcgaacagcaacaacaacagcagcgggtACATTGCGACGtcaataacagcagcagcatcggcatcaccatcagcagcagcaacaacaacaatgacaacaacaacaactgcggcGGCCGCAGCTAATctgcgccaacaacaacaacaacaatttgaattcagTCGCGCTCTACGCACAGACGTCTCTCTGGTGCCGCCCATACGACAGACAGCCTCCATATTCAAGCAGCCGGTGACGGTGGTGCGCAATCATGAACCCAGCAAGGTTAAGCACGATGCCAAACACGGTGGCCAGGAGAAGCCCAAGCAACTGTTCTGGGAGAAGCGTTTGGAGCGGTTGCGTGCGTGCCATGACAACGGCGAGGAGCTGGACGACATAACACTGCCAAAAACCATACGAACTGTGGGTCCCAATGTTAACGAACAGACTGTATTGCAATCGGTGGCCACGGCGCTGCATATGCTCAATGCTGGCGTGCACGGCCAGAGCTCGACCAAGGCTGAATTGACTAAAAATGCCATGGCATTCATGAATCCCGAACAGCCACTAATGCATGCAGTAATCATCTCGGAAGATGACATACGCAAGCAGGAGGAtcgtgtgggcgtggcacggCGAAAATTACAAGATGCGCTCAAGATATGA
- Protein Sequence
- MQMNPSITIERKRVDCSALPKGWQREEVHRKSACNSGVDVFYYSPTGKRIESKPQLARQLNAEMFDISNFDFQTGKMQLQRQMPSPSISLYRCNAAGAIIGNAGPGGNSVNALKRKYSRAQTLSSNSNNNSSGYIATSITAAASASPSAAATTTMTTTTTAAAAANLRQQQQQQFEFSRALRTDVSLVPPIRQTASIFKQPVTVVRNHEPSKVKHDAKHGGQEKPKQLFWEKRLERLRACHDNGEELDDITLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVGVARRKLQDALKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00593092;
- 90% Identity
- iTF_00802836;
- 80% Identity
- -