Hcon020947.2
Basic Information
- Insect
- Hirtodrosophila confusa
- Gene Symbol
- retn_1
- Assembly
- GCA_035043065.1
- Location
- JAWNNI010000242.1:6874118-6895144[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-26 1.3e-22 80.4 0.0 2 89 376 461 375 461 0.96 2 2 4.6 1.2e+04 -2.7 0.1 21 40 621 645 597 658 0.54
Sequence Information
- Coding Sequence
- ATGTGCGATGTTATGGCCACAAAAGAGGATGAAGCATGGAGGATCGAGGTGAACACGgggacggagacggagacggagacggagacggagacggagacggagacggagacggagacggagactgAGATGAAGGTGAAGGTGGAGGTGGAAGTGGAGGCTGCTGCCACTAAACTGAGGCAACACTGGAAGAGCAAGCGCGAGACGTTACCATTTCATTATGCGCGTCCGCGTTCGCATTCGCGTTCAAGCCAATCCCACGGCGATCGTACGGATGACGAGATGCGCGACTGCGACTCTGTGGACGGGGAGCATCATCAGCTGAGCGCCAAGGCGGCAATTGCAGCCCGTCTCAGTCACACAGTCGCCGGCGGCGTGGGCCTCAACTTTGCCAGTCCGGAGCAGCAAACAGATCTGCCACTCAGCCATCATCACCAGCTGCCACCAAATCATCCGCTTAATGCTCTCGGCAGCTTCATGGGCATCGGCGGTCTACACAGCATTCCAAATCTGCAGCACAGCGATGTCCTGGAGAAGCTCAAGATGCAAGTGCGAGACATGAAAGTTGGTCTCATGGAGCAGGATTATGCAGCAGCGGCCCATGCGGCTGCATTTGGCGCCAACATGCTGCCCACGACCATCAGCTCGGCCTTTCCGCTGCCGCACAACACGGTGGCCGCGGCCGCGGCAGCTGCAACCTTTGGCCATGCAACAAACGCGCCCGTGCCGCCAGCCAGCAATGGCGCCAGTTACAATGGAGGAGGCTCAGGTGTTGGGGCAGGCGCAGGAACGGGTGCGGGAGCGGCGGCAGCTGTGGCTAGTAACAATGGTGGAGCtgcaggaggaggaggagctggaggaggaggggctGGTGCAGGAGCTGCGgccagtaacaacaacaacaacagcaacaacaacaacaacaatgccggCAATGGTCATCCCTTCTCATTTGCATCACCGACAGCGCCGAGCGCCAAAGAAGCGCGCCACTTTACAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCCCAACAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTGTATGAAATCAACGATGATCCCAAGCGCAAGGAGTTTCTCGATgatttgttttcgtttatgcAAAAGCGAGGCACGCCCATCAATCGCCTGCCCATTATGGCCAAGTCTGTGCTGGATCTGTATGAGCTATATAATCTGGTGATAGCACGTGGCGGCCTTGTCGATGTTATCAACAAGAAGCTATGGCAGGAGATCATCAAGGGATTGCATCTGCCGTCGAGCATCACCAGTGCCGCATTCACCCTGCGCACCCAATACATGAAGTATTTGTACCCGTACGAGTGCGAGAAGAAGAATCTCAGCACACCGGCCGAGCTGCAGGCGGCCATTGATGGCAATCGCCGCGAAGGACGTCGCTCCAGCTATGGCCAATACGAGGCTATGCACAATCAGATGCCACTGACGCCCATTTCACGGCCACCGCTGCCGGGTGGCATGCAACAAATGTCGCCGCTGGCGCTGGTCACACATGCCGCGGCAGCCAACAATCAGCAGGcgcaggcagcggcagcggccgcAGCAGCGCATCGCCGTCTGATGCAGGGCGGGCCGGCGTTTGGCCAGATGCCAAATCTGATGACACAGGAGCTTGAGAATCGCATGATGGAATATCTGCAGCTGATACAGGCCAAGAAGGATCAAAGTGCGCCTGTGCTAGGCGCCACACATccccaccagcagcagcagcaacagtcgctGCACCatcaccaacaacagcaacaacaacagcagcagcagcaacagcagcagcgccaacgCTCACAGAGTCCCGAGCTGAGCACGCGGGATGCGCTGAGTGCGCAGGTTGCACTGTGGCATATGTACCACAACAGCAGTCCAACCGGCTCGGCGCACACCTCCCCACAGCAACGCGAAGCCTTGAACCTCTCCGACTCGCCGCCGAATATCAATCTGAATCACATAAAACGCGAACGGGAACGTGACCCAACGCCTGAGCCGGCGGATCATGAGGAGACACCGCATCAGCCGCCGCCGGCCAAACGTGTGGGCAGCGGTCTGATGCCGCCCGGTTTTCCTGctaacttttatttgaatcCACACAATATGGCcgctgtggctgctgccgcGGGCTTCCATCATCAGGCGAACAGCGGcgctcatcatcatcagcagcagcagcagcagcaacaggatgCGGCGTCGGAGGGCGAGCCGGAGGATGAGTATGGCAATGCGGAGCACAACACCACCGGCAATTCGTCCTCCATGCACGACGACAGTGAGCCACAGCAGCTGAATggacaccaccaccaccaccatcatcatcaccatcagaATCATCTAGACAAGTCGGATGATTCGGCAATTGAGAACTCGCCCAGCACTTCCACAACGGCCTCGGCATCGGGCGGCCATCGTCACAGTTCGCCGGTTTCCACCAAAAAGAAGAGCGTCGGCAGCAAGACACAGTCCAGCTCCAAGGATACGCTGCAGGACAATTGTACGGGCAGCAACGTCAAGCTGAATCCCCTCGAGACTCTCAGCCTGTTGTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACCGGCGCAAATGGCGAACCGCAGTTGATTGTCAACCTCGAGCTGAATGGCATTAAGTACTCGGGTGTGCTGGTGGCCAATGCAGCCAGGCCAGACCAGAGCGAGGACACCGACACGCCAGCTGCAGCCAGGACCGAGGAGCCAGCGATTGCGGAAGCCAGCAATGCGGTCAAGCACGAAAACAGCCAGGAAGTCAGCCAGAACGAGGCAGTCGAAGAGGAAGCGGAGCAGCCCATGGATGACATTCTGAATGGAGCGAGTGGGGGTGGTgttggcagtggcagtggtaGTGGGACTGTGGGCGTATCTATGCTAAAAGATGCTGTGGTCAGTTCGTAG
- Protein Sequence
- MCDVMATKEDEAWRIEVNTGTETETETETETETETETETETEMKVKVEVEVEAAATKLRQHWKSKRETLPFHYARPRSHSRSSQSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGVGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSAFPLPHNTVAAAAAAATFGHATNAPVPPASNGASYNGGGSGVGAGAGTGAGAAAAVASNNGGAAGGGGAGGGGAGAGAAASNNNNNSNNNNNNAGNGHPFSFASPTAPSAKEARHFTANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMQGGPAFGQMPNLMTQELENRMMEYLQLIQAKKDQSAPVLGATHPHQQQQQQSLHHHQQQQQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPNINLNHIKRERERDPTPEPADHEETPHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQANSGAHHHQQQQQQQQDAASEGEPEDEYGNAEHNTTGNSSSMHDDSEPQQLNGHHHHHHHHHHQNHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKSVGSKTQSSSKDTLQDNCTGSNVKLNPLETLSLLSGMQFQVARNGTGANGEPQLIVNLELNGIKYSGVLVANAARPDQSEDTDTPAAARTEEPAIAEASNAVKHENSQEVSQNEAVEEEAEQPMDDILNGASGGGVGSGSGSGTVGVSMLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502302;
- 90% Identity
- iTF_00804965;
- 80% Identity
- -