Hass003019.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hestina assimilis
Gene Symbol
-
Assembly
GCA_016906905.1
Location
JAFDUZ010000027.1:571857-573323[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.047 4.2 8.5 0.5 1 23 153 176 153 176 0.95
2 10 0.21 19 6.5 0.2 2 23 180 202 179 202 0.90
3 10 0.0061 0.55 11.3 0.4 1 23 204 227 204 227 0.96
4 10 0.055 5 8.3 3.8 1 23 230 252 230 252 0.95
5 10 2.7e-05 0.0024 18.7 0.5 2 21 257 276 256 277 0.93
6 10 1.8e-05 0.0017 19.3 0.2 1 23 296 319 296 319 0.94
7 10 9e-07 8.1e-05 23.4 1.2 1 23 325 347 325 347 0.97
8 10 6e-05 0.0054 17.6 1.2 1 23 353 375 353 375 0.99
9 10 0.00098 0.089 13.8 0.4 1 23 381 404 381 404 0.95
10 10 0.0018 0.17 13.0 4.8 2 23 410 431 409 432 0.94

Sequence Information

Coding Sequence
ATGGTCGAAGATAGTGATTTGAATATAATTGTATCAAACATTTTGAACGAAAAACGCTACAGCCATTGCAGGTTATGTTTGAAGATTATTAGAGATCAGTATGTTCGTTTCGATGATGCGGTTTCTTTGGATCCTTCTAGTGGTGTTTTTCAGCCGCTGTCCGAACTCCTAACGAAATTATTAGGCGAAAATATATGTGATGAAATTACTGGTGTCGAAGCAGTTTGTACAGAATGTGTGAACGTTGCGCTATCATCGGCCCGTTTTATAGAAAAATGTCAGGCTTCCTCGCAAATTCTAAATCTAGTATTCGAAAATCTATCAAAAGCAATCTATACCAATATTGACACAAGCAATAGAAATAAATCTTTGTTTGTTGTGATTGAAGACTTCGAATCGAAAATCCTGATGGTTAATAAACCTCAAAGAAAGGACAAGTCTACAATAAAGCTACCATTCAATTGTCAACTCTGTGATTTATATTTTGATACATTCACAGATGTGAAGGCACACAACCTTACAGTACACAGAACCGTGACATGTGAAAAATGTCTTGAAACATTTGAAAGCAACATTGATATGGTTTCTCATGAAAGTTACAGCCACAAGTACAAATGTTCAGACTGTCCTCAATATAGAAGTACGGAGGAAGGCTTGAAAGATCACAGAGATAAGGTGCACAATGTATATGTTTGTAAAGAATGTGGAAAACCTTGTCATGGCCTCGATAAGTTACATTTACATGAAGATAAGCATCAAGGAAAAAGCTCTTGTCCAAAGTGTGGAAAGAGTTACACTACTAAAGATTTTTTTGAAAAACATGTCAATTTGTGCCTTAACAATTTAATTGATCCGCATCCAATAAGGAGCACTATGGAGAAATCATATTCTTGTGAAAAATGTGACAAAGCTTATAGTACACCTGGCGGTCTTCGCGTACATAACAGATTTGCACATGGGAATGCCAAGCCTCATGTATGTAAAGAATGTGGCAAGAAATTCACAGCACCTAGTTATTTGAAAGTCCACATGGTTAAACATACAGGGGAAAAGAATTTTAAATGTGAAATTTGCAATAGTAGATTTGTTTCAAAAGAAGCTCTATTATATCACACTCGACGCCACACTGGAGAAAAGCCTTATAGTTGTAAAATTTGTAGTGAAAGATTTGTTAATGCTTCGGCAAGGGCTGAGCATATTAAGTTTAAGCATGTTGGTCCCACATTAATGTGCGAGATATGTTCTAGAAAATTTGTGACAACTCATTTTCTAAAACAGCACATAAGTAGACATCACGACCCAACTAGCAAGTTGTTCTACGGTAGAAATATGATTCCACCTAATCTGCCTGTTGAGCAGAACATGAAAAGGTTTATTATCAAAACTGAAAATTAG
Protein Sequence
MVEDSDLNIIVSNILNEKRYSHCRLCLKIIRDQYVRFDDAVSLDPSSGVFQPLSELLTKLLGENICDEITGVEAVCTECVNVALSSARFIEKCQASSQILNLVFENLSKAIYTNIDTSNRNKSLFVVIEDFESKILMVNKPQRKDKSTIKLPFNCQLCDLYFDTFTDVKAHNLTVHRTVTCEKCLETFESNIDMVSHESYSHKYKCSDCPQYRSTEEGLKDHRDKVHNVYVCKECGKPCHGLDKLHLHEDKHQGKSSCPKCGKSYTTKDFFEKHVNLCLNNLIDPHPIRSTMEKSYSCEKCDKAYSTPGGLRVHNRFAHGNAKPHVCKECGKKFTAPSYLKVHMVKHTGEKNFKCEICNSRFVSKEALLYHTRRHTGEKPYSCKICSERFVNASARAEHIKFKHVGPTLMCEICSRKFVTTHFLKQHISRHHDPTSKLFYGRNMIPPNLPVEQNMKRFIIKTEN