Dvan022124.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dione vanillae
Gene Symbol
-
Assembly
GCA_037178615.1
Location
JAZFAU010000299.1:2224818-2227321[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 2.2 2.4e+02 3.5 0.6 2 16 212 223 208 231 0.68
2 10 0.0035 0.39 12.3 0.8 1 23 234 257 234 257 0.93
3 10 0.014 1.6 10.3 1.1 1 23 259 282 259 282 0.96
4 10 0.0044 0.49 11.9 0.1 1 23 285 307 285 307 0.97
5 10 0.00013 0.014 16.8 0.4 2 21 312 331 311 332 0.93
6 10 8.7e-05 0.0096 17.3 0.2 1 23 351 374 351 374 0.94
7 10 4.9e-07 5.5e-05 24.4 1.2 1 23 380 402 380 402 0.97
8 10 0.00015 0.017 16.5 3.4 1 23 408 430 408 430 0.99
9 10 0.0013 0.14 13.6 0.4 1 23 436 459 436 459 0.95
10 10 0.0024 0.27 12.8 4.8 2 23 465 486 464 487 0.94

Sequence Information

Coding Sequence
ATGgcacatttatttttcatattattaatatgtaccGTAAATTTGGGTAAACATGTGTTTGCTGCTGATAGCTTGGATGATGAATATCACGATATGTCTACAGAAAgtaCGCCTCCACAATTTCCACTAAGTTTTGATCAAGTTCTTACAGATGCCggcaatattttttacaaatttattgacACGATCACGTCTAAAAAACGTCTCTTAGGTCTTGATTCTAAATGGTACTGgttatgtttaaaatatattaaagaacaaTATGTTCGTTTTGACGATCCCGTCTCTTTGCACCCATCAAGTGGTGTTTTTCAACCTTTATCTGATATTTTGGAGAAATTACTCGGAGAAAATgtTTCAGAAGATATTACTGGCATTGAAGCAGTTTGTACAGAATGCACAAATACTGCACTTGTTTCACTCCGTTTcatagaaaaatgtaaaaagtctACCACTGTTTTAGATCAAGTATTTGACAACTTATCCAATACATTAGATGCTGATATTGAtattgaagataaaaataaatcattatacaTGGTAATTGATGACCTCCAGTCCAGAATACTTTATGTTGACAAACCACAAAGGAGACACaaacataacataattaaaaaacccTATGAGTGCATCTCTTGTGATGATTGTTTTGAAAGTTTTGTTGATTTAAAAGTGCACAATTTAGGAGTTCATGAAAGTTTTACTTGTGACAAATGTAtggaaacatttaaaaatgaagATGATTTGATGTCTCATGAAAGTTATAGTCATAAATACAAATGTTCAGAGTGTCCTCAATACAGAAGTACTGAAGAAGCTTTAAAAGATCATCATGATAGAGagcacaatatatatgtatgtaaagaaTGTGGAAAGCCTAGCCAAGGATTGGATAAGTTGCAGATACATGAGGAAAAGCACAAATCAAAGAGTGAGTGCCCCAAATGTGGTAAGCGGTATACTACAAAGgaattttatgaaaaacatGTAAATTTATGTCTAAACAATTTGATTGATCCACATCCTATAAGAAGTTCAATGGACAAATTATATTCTTGTGAGAAATGTGAGAAAGCCTACAGCACTCCAGGAGGCTTGAGAGTGCACAATAGATTTGTTCATGGCAATGCAAAACCGCATGTTTGCAAAGAATGTGGTAAAAAATTTACCGCACCAAGTTATCTGAAAGTACACATGATTAAGCATACTGgggagaaaaattttaaatgtcatatatgTAATAGTAGATTTGTTTCTAAAGAAGCTCTGTTGTATCACACAAGGCGACATACTGGGGAAAAGCCTTATAGTTGTAAAATTTGTAGTGAAAGATTTGTCAATGCTTCGGCTAGAGCCGAGCATATTAAGTTTAAGCATGTGGGGCCTACACTAATGTGTGAGATTTGTTCTCGCAAATTTGTCACTACTCATTTCCTAAAACAACATATCAGTAGACATCATGACCCCAGCAGCAAACTCTACTATGGTAGGAACATGATTCCTCCCAATCTTCCTGTAGAACAAAACATGAGAAGGTTTATCATTCAAACAGAAAAttga
Protein Sequence
MAHLFFILLICTVNLGKHVFAADSLDDEYHDMSTESTPPQFPLSFDQVLTDAGNIFYKFIDTITSKKRLLGLDSKWYWLCLKYIKEQYVRFDDPVSLHPSSGVFQPLSDILEKLLGENVSEDITGIEAVCTECTNTALVSLRFIEKCKKSTTVLDQVFDNLSNTLDADIDIEDKNKSLYMVIDDLQSRILYVDKPQRRHKHNIIKKPYECISCDDCFESFVDLKVHNLGVHESFTCDKCMETFKNEDDLMSHESYSHKYKCSECPQYRSTEEALKDHHDREHNIYVCKECGKPSQGLDKLQIHEEKHKSKSECPKCGKRYTTKEFYEKHVNLCLNNLIDPHPIRSSMDKLYSCEKCEKAYSTPGGLRVHNRFVHGNAKPHVCKECGKKFTAPSYLKVHMIKHTGEKNFKCHICNSRFVSKEALLYHTRRHTGEKPYSCKICSERFVNASARAEHIKFKHVGPTLMCEICSRKFVTTHFLKQHISRHHDPSSKLYYGRNMIPPNLPVEQNMRRFIIQTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00796762;
90% Identity
iTF_00776231;
80% Identity
-