Basic Information

Insect: Heliconius nattereri
Gene Symbol: -
Assembly: GCA_013403645.1
Location: JAAIXI010000230.1:11972083-11974472[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.2 2.2e+02 2.7 0.4 1 20 208 227 208 231 0.73

2 10 0.044 3 8.6 0.2 2 23 235 257 234 257 0.91

3 10 0.0041 0.28 11.8 1.3 1 23 259 282 259 282 0.98

4 10 0.0012 0.081 13.5 0.5 1 23 285 307 285 307 0.97

5 10 0.00011 0.0072 16.8 0.4 2 21 312 331 311 332 0.93

6 10 5.9e-06 0.0004 20.8 0.1 1 23 351 374 351 374 0.96

7 10 3.6e-07 2.5e-05 24.6 1.0 1 23 380 402 380 402 0.97

8 10 0.00013 0.0089 16.5 3.4 1 23 408 430 408 430 0.99

9 10 0.0011 0.074 13.6 0.4 1 23 436 459 436 459 0.95

10 10 0.002 0.14 12.8 4.8 2 23 465 486 464 487 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.2	2.2e+02	2.7	0.4	1	20	208	227	208	231	0.73
2	10	0.044	3	8.6	0.2	2	23	235	257	234	257	0.91
3	10	0.0041	0.28	11.8	1.3	1	23	259	282	259	282	0.98
4	10	0.0012	0.081	13.5	0.5	1	23	285	307	285	307	0.97
5	10	0.00011	0.0072	16.8	0.4	2	21	312	331	311	332	0.93
6	10	5.9e-06	0.0004	20.8	0.1	1	23	351	374	351	374	0.96
7	10	3.6e-07	2.5e-05	24.6	1.0	1	23	380	402	380	402	0.97
8	10	0.00013	0.0089	16.5	3.4	1	23	408	430	408	430	0.99
9	10	0.0011	0.074	13.6	0.4	1	23	436	459	436	459	0.95
10	10	0.002	0.14	12.8	4.8	2	23	465	486	464	487	0.94

Sequence Information

Coding Sequence: ATGGCAAATTTAGTTTTCATACTATTGATAATTGTAGTCTTTTCGGGTATAACATATGCTACTGATAGCTTAATAGATGATGAATATCATGAAACGTCTACCGAAAataCGGCACCACAATTTCCGCTAAACTTCGACCAGGTTCTCACAGATGCtggcaatatattttacaaatttattgataCAATTACATCCAAAAAACGTCTCTTAGGTCTTGATTCTAGATGGTATTGgttatgtttaaaatatatcaaagaaCAATATGTTCGCTTTGATGATCCTGTCTCGTTAGACCCATCTAGCGGTATTTTTCATcctttatctaatattttggaGAAATTATTTGgtgaaaatGTCTCTGAGGATATCACTGGCGTCGAAGCTGTGTGTACAGAATGCACAAATACTGCACTTGTTTCACTtcgttttatagaaaaatgtaaaaactcgaccgatattttaaatcaagtGTTTGAAAACTTATCCAATACTTTAGATGCAGATATTGAAATtgaagacaaaaataaatcattatacaTGGTGATTGATGACCTCCAGTCGAGAATACTCTATGTTGATAAACCACAAAAGAGGCACAAacataatatagttaaaaaaccATATGAGTGTATCTTGTGTGATGACTGTTTTGagaattttattgatttaaaagtGCACAATTTAGGAGTTCATGGAAGTTTAACTTGTGACAAATGTATGGAAACATTTATTAACGAAGAGGATTTGATGTCTCATGAGAGTTATacccataaatataaatgttctgATTGTCCCCAATATAGAAGTTCTGAGGAAGCTTTAAAAGACCACCATAATCGAGAacacaatatatatgtatgtaaagaaTGTGGTAAGCCTTGCCAGGGGTTGGATAAATTGCAAATACATGAAGAAAAGCACAAATCAAAGAGTGAATGCCCTAAATGTGGTAAACGTTACACTACTAaggaattttatgaaaaacatgtaaatttaTGTCTAAACAACTTAATTGATCCGCATCCCATAAGGAGTTCCCTGGACAAGTTGTATTCCTGTGAGAAGTGTGAAAAAGCCTATAGCACCCCAGGGGGATTGAGAGTGCACATTAGATTTGTTCACGGCAATGCTAAACCACATGTTTGTAATGAATGTGGTAAAAAATTTACTGCTCCAAGTTATCTTAAAGTGCACATGATAAAGCACACTGGGGagaaaaactttaaatgtCACATATGTAACAGCAGATTTGTTTCTAAAGAAGCTCTGTTATATCATACTAGACGTCACACTGGGGAAAAGCCTTATAGTTGCAAAATCTGTAGTGAAAGATTTGTTAATGCATCAGCTAGAgctgaacatattaaattcaaacatGTCGGGCCTACACTTATGTGTGAGATTTGTTCTCGAAAATTTGTTACAACTCATTTCCTGAAACAACATATTAGTAGACATCATGATCCAagcagtaaattatattacggtAGGAACATGATACCTCCAAATCTTCCTGTAGAACAAAATATGAGAAGGTTCATtattaaaacagaaaattGA
Protein Sequence: MANLVFILLIIVVFSGITYATDSLIDDEYHETSTENTAPQFPLNFDQVLTDAGNIFYKFIDTITSKKRLLGLDSRWYWLCLKYIKEQYVRFDDPVSLDPSSGIFHPLSNILEKLFGENVSEDITGVEAVCTECTNTALVSLRFIEKCKNSTDILNQVFENLSNTLDADIEIEDKNKSLYMVIDDLQSRILYVDKPQKRHKHNIVKKPYECILCDDCFENFIDLKVHNLGVHGSLTCDKCMETFINEEDLMSHESYTHKYKCSDCPQYRSSEEALKDHHNREHNIYVCKECGKPCQGLDKLQIHEEKHKSKSECPKCGKRYTTKEFYEKHVNLCLNNLIDPHPIRSSLDKLYSCEKCEKAYSTPGGLRVHIRFVHGNAKPHVCNECGKKFTAPSYLKVHMIKHTGEKNFKCHICNSRFVSKEALLYHTRRHTGEKPYSCKICSERFVNASARAEHIKFKHVGPTLMCEICSRKFVTTHFLKQHISRHHDPSSKLYYGRNMIPPNLPVEQNMRRFIIKTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00796762;
90% Identity: iTF_00776231;
80% Identity: -