Hcom009615.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- -
- Assembly
- GCA_905404135.1
- Location
- FR990017.1:3059063-3066620[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 1.7e-06 0.0002 22.4 2.8 1 23 197 219 197 219 0.98 2 27 0.00043 0.049 14.8 0.8 2 20 255 273 254 275 0.93 3 27 0.00016 0.018 16.2 0.1 2 23 300 322 299 322 0.96 4 27 0.0031 0.36 12.1 0.9 1 23 381 403 381 403 0.97 5 27 0.17 19 6.7 0.0 1 23 421 443 421 443 0.95 6 27 0.00018 0.021 16.0 0.3 2 23 481 502 480 502 0.95 7 27 0.00016 0.018 16.2 2.0 2 23 546 568 546 568 0.97 8 27 0.0033 0.38 12.0 1.2 1 23 618 641 618 641 0.95 9 27 0.0033 0.38 12.0 0.1 1 23 697 719 697 719 0.97 10 27 0.0025 0.28 12.4 7.4 1 23 730 752 730 752 0.99 11 27 0.068 7.8 7.9 1.8 2 23 764 785 763 785 0.96 12 27 0.004 0.47 11.8 0.7 1 23 795 817 795 817 0.98 13 27 0.016 1.9 9.9 6.9 1 23 846 868 846 868 0.96 14 27 0.00036 0.042 15.1 4.3 1 23 879 901 879 901 0.98 15 27 7.4e-06 0.00085 20.4 2.5 1 23 909 931 909 931 0.98 16 27 0.0042 0.49 11.7 0.2 2 23 951 973 950 973 0.97 17 27 0.27 31 6.0 4.2 1 23 1020 1042 1020 1042 0.97 18 27 0.012 1.4 10.3 3.7 3 23 1054 1075 1052 1075 0.93 19 27 0.0019 0.22 12.8 0.3 1 23 1097 1119 1097 1119 0.97 20 27 7.7 8.9e+02 1.4 3.9 2 23 1162 1184 1161 1184 0.94 21 27 0.0016 0.19 13.0 1.7 2 23 1200 1221 1199 1221 0.94 22 27 0.45 52 5.3 3.2 5 23 1231 1249 1228 1249 0.94 23 27 0.0044 0.5 11.7 0.8 2 23 1260 1282 1259 1282 0.95 24 27 0.35 41 5.7 2.6 2 23 1299 1317 1299 1317 0.89 25 27 0.1 12 7.3 0.5 2 23 1392 1413 1391 1413 0.93 26 27 0.0014 0.17 13.2 0.4 2 23 1424 1446 1423 1446 0.96 27 27 4.8 5.5e+02 2.1 7.5 1 20 1483 1502 1483 1504 0.92
Sequence Information
- Coding Sequence
- ATGGCACTCAAGCTGGGAAAATGCAGACTTTGCCTCAAGCTTGGCGACTTCTACTCCATCTTCACGATGGACAACAATTTACAGCTCGCCGAAATGGTTATGGAGTGTACCAAAGTGAAGGTGTACGAAGGCGATGGTCTTCCAGACAAAATCTGCTCAGAATGCATCCAGAAGCTCAGCAGTGCTCATATTTTCAAACAACAGTGTGAAAGGGCGGATGAAGAGCTGCGTCGCAATTACGTTCCTCCGCCAGGATTCAGCATTAGTCCACCGCCAGCTGCTAACAGACAAAGTAGCGATTCGGCGTTTTCTAATAATACTGATGTGTCTAATAAACCTTCACCATCAATCGAAACGACATCCACACCAATCAGTCGTAATCGGAAGAGAAGCCACGAAAGCCTAGACAATGCTTCTACGAGTAGCCAGTCTCACGATAACCGACCCGGCACCACTAAACGCGTTCAGGAACTTAGAAAAACTTCGACTCAAAAGCGACCGAAAACAAATTACTATACGGATTCCGATTATGATTACAATAGCCCATCGCAATTATCCGTCGAAACTGACTCCGACGACTTCCTAGAGCACAGGTGTAAAGAATGTGACAAACGTTTCGATACCAGCAGAGGTTTAATTAATCACATGAGGATGCACGAAAGAGCAGCAAAACAGGAAAGTGTGAGCGAAAATGAAAATACTCCGCAACCTTCGCAACCTTCGAAACCTTCAGAGGATGCGACCGACGTGGACGATAAACTGAGCTGCGACAAATGTGGGAAAACGTTCAAACTCAAGATCATGTTAAAACGTCACCACGATATTTGCACCACACCACCCTTGAAAGAACTCAAAGTGTCTCTTGAACCAATAGACGGGAAGGTCGGAACGAAAATTGAATGTGAAATATGTAACGCGAAATTTAAGTCTATCGATAATTTAGATAAGCATTTGCGAGTGGTTCACGCTGCCGCGCCCAAGAAAGAAAAGGTTCCCCACACAACCACACAGCCACAAACACCACAACCCGAAAACGGTAAATTAATATTACCGTGCATGTACTGCAGAAAGCCGTACGCAGATTACTATTCCCACAACGCTCATTTCAACGCATGCTGCAAAGGAAAGTATAATGGCTTTTTCGAATGTCCATTGTGTCACAAAATGGTTGTTAAGAAAGCATCTTATTTCCTTCATATAAAGGCCCATTTCATGCAAACGATTCCGACAACTCCAGTGTCAGCAGAATCTCGTAAAAAGTACGATTGCCGGATTTGCAAGCAGAAACTGCCTTCGGAAGAAGAATTGGTGACCCACTTAGCAGCACATATGTCTAATATTGAAGATCCTGATGACGACGGATCAAGGGCGAGCACACTCGATGATTCAGCGTCCATACAATCAGAATACTCTAGTACCAAAGTTACAACTGGCCCATTGAGTTGCGGAATTTGTGGCAAGAAATTCACTTATAAGAAAGCTTTAGACTCGCATGTTGCGAAGCATTCCCAAGCGGAGATAAATATAAAAGCAGAGCCGCCAGATAAAAGTTTGAACCAGTCATCAGAACTGTTGACTGAAGCGGCGCAACATTCGGAGTCAGAGTCTAGTCAAGATGAGGGGGAAGATGATAATACGTGCGACATTTGCGAGAAGCAGTTCTCTTACAAGCGCCTTCTGATCCAACACAAGAGGACGAAGCATCCGATGACGGCAGGAACGAAGCGAGCCAAAGTCAACCTCAAAGACTGCTCCGTTCGATGCCTGATCTGCGACATCGAGATGAAAGTGAGCGCAATAAACGAGCACAATCAAACTCATATATCTAAGAACATAAAGCCGAGGAATCTCTACACTTGCATAATTTGCGAGGAGAAGTTTAAGAGTTGTAGTACGCTGGCGAATCATATAAAGTTGGTGCACCGGCTGAAGCAACAGTCGTCGAAGCCACAGACAGTAGCGCCAGACCTGGCGGATTTTTGTGAAGTCGTTGTGACAAAGGCGGAACCCCTGGACCTGATCCAGAGTCACAACGGCTTTGGTGAGGATTCCGCCCAAGGTGGCAAGCCGCTGGTCAACCTCAGCGGCTTCACTTGTCCCATTTGCAACAAGCAGATGCCCACTTTGATTTCACTTAATAGACACGTCAACTGGCATACTAATGTCGGCAACAACATCGAGAAGAAGTACGAGTGTTTTGTTTGTAAAGAGACATTCCGGTTCCAGTGCCATTATAAAATGCACATGCGAGTCCACTACCACGACACTAATTTGGACCCGAAGCTTCTTACCTGCTCCATCTGCAATCGTAAGAGCAAACACTTACGGGCCGCGCAGGCTCACATGAATTTCCACAAGCAAACACGATTCAAGACAAAAGACTATGAGTGCTCCATCTGCAAAAGAGTCTTCCAGTATCGGAAAGTGTACCTCTCTCACATGGCGATACATTACAAGCGAGGCGATAGCGCAAACAACACCATTGTAGGCTCCGAGCTTCCCACTTCAGCAGACAAAACTATATTCGACGGGACTCATACTTGCCACATATGCAGAAAAGTCTGTGACTCGGAGACATCTCTCAAGCACCACATCATTTGGCACAACTCCAAGACTTCCTTGTATGGCAATCGTCACACCTGTCACATATGCGACCTGCAGTTCACGAACAAAAAACGATTGGAGCTTCACATCCGATTACATTATGAAGATGACAATGGTCCCTACAAGTGCCATATATGCGGCAAGGGTTACACTAATGAGGACTATTTCAAACGGCACGTAAAGGGACATAACTTCGATCATCAGTCTCATAAGAAGCGTATAGAAAAGTTGAGAAAGGACAAAGTAAAGTGCCCGATATGCGCACGATTCTACCCAGATCTCCTGAAGCTTATTCGACATTTGAGACGCACGCATCCAGAAAGCAAGATGATCAAAGAAGACCCGGATGCTCCGCCTCCCAATTACTTTTCGTGTAAGTTGTGCGCCAAGGTGTTCCTCGACGAACGACGGTTGCAATTCCACGAAGAAGCTCATCTCAGGAAGCCAGAGTTCTTTAAATGTAAATTCTGCGGCAAGAAAACTATTTCGCTGAGAACTCACAATGTTCATATCAAATCACATTTGGCACAGAAGTATTTGGACAAACCTCTCGATTGTCCCCATTGTGATCAAAAATTCACTAAAGGGTGGTATCTGCACCACCATCTTCGTGATGCTCACAATATTATCGAAAACTGGATCGCGGATCGCACCACGCAGACATTAAATGGTCCCTTGAAGGAATTCCAGTGCTCTGTCTGCCTCAAGATATTAGCCAGTAAGGGTAACTTCGAGAGGCACATAGATTATCATAACTCATTAAGATGTAACTACTGCTTTGATTACTTTAGCTCCTTGAGATTTTTAGAAGGTCATTTAACATTCAGTTGCGAGAAGAAAAAACTAATTGGAGATACAGAAATTTATCCCAGAAGAATAAAGTGTCAAGTTTGCTACAAGGCATTCCATTTGCAAGTGAAATTGGATTGTCATTTACGGACGCAGCATGGAATCAAAGTGTTCAAGGAGGCCTCGGAGAGCAAGAAGGATTGTGTGTGCGATTACTGTTTCAAAGTTTTCGAAAATGAGTACGCGCTAAACACGCATAAGATTTATCATCGCACGGTCGGTTTCTACGGGTGCATTTACTGCGACCGGAAGTTTAACACTATGACGGCGTACCGGAAACATAAAAATCATCACTTTTCACAACTGAATGTCGATAATCCTACGAAGTGCGAGCATTGCGATGAAACGTTTGTTCCTTTCAGAGACATGATATATCATATGAGGGACGTGCACGGTGACGATAAAGAATGGATAATTTTGCCTAAGGAGTCAATTGAAGAAAAATGCCCTATTTGCAACAAAATATTCTTCAATCTCCACAGACATCTCGACTACCACGAAGAGAATAAGTGTAAGAAATGTAACGAGTACTTCTTATCTCACTTGGACTACGACAATCACTTGTGCGCGATCGACTCCGACGACGACGAAGCTATGAACGCCAGCGTCGAAAATGGCAATATGCCGAAGTACGAAGAGTGTCGATTCTGCTTCAAACCCATAACTAGAACGAGTTCCAAGCTCAAGCACGATCAAATTCACAAAAGCTCCGGGTCCATTTCTTGTCGGTTTTGCGATTTGAAGTTTAAAACGATAGACGCATTTAATATTCACGCATTTTCACACCGAAGCAGAAAGTATAACAAGAAGCCGATAAAGTGCCGAATTTGCGGAGAGAAATTCGTTAAATACGGACCGTTCATGAAGCACATGAAGAATGTTCATAAGAATATGAAGAAATTGCACTATCGGGCGGTGGTCAAAGAGGAGGAGTGTGTGATTTGCGGGGATTTCTTCCCGAACCTGCATAACCACTACCGGGCGCACTTGCTGCATCAGTGTCAGATGTGTCACAAGTACTTCACGTCTTTCAAGGTGTTCTCCAAACACACGTGCGACAGCGAAGACTCGGATCCCTCGAAAGTTTTCACCAGCGACGTAGATCTGCCGACGCTGATCAACACCTACGTTCCCAAAGACGAGAGAGACGACGAGAAATATTACGGTTACACGGATGACGAGGAAGAAGAGGCGGAAGCTGAAGCTGACGTGCCAGACGAGGAACCGGAGAGCAAGGTCCGGGATACGAAACCTATGTTGTTCGACGAGAACAGTCAAATTACATTGGACGATGAAAGTCAAAATTCAGTGGACGAAGAAGAGAGTAACATGCACTCGATGGTCCACGCCCCGATCATATCGGACGTTCTCTCTCTTTACCAAAAGGAGGAAGCCGGGACGGCTGCTCAGGAGGAAGCCGACGATGACGTCGTTAATTTGATCGACGAGGACTCGGTGGGATTTGAGGAAAATGTCTTAACAGTTATCACGATCGAGGACTGA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTMDNNLQLAEMVMECTKVKVYEGDGLPDKICSECIQKLSSAHIFKQQCERADEELRRNYVPPPGFSISPPPAANRQSSDSAFSNNTDVSNKPSPSIETTSTPISRNRKRSHESLDNASTSSQSHDNRPGTTKRVQELRKTSTQKRPKTNYYTDSDYDYNSPSQLSVETDSDDFLEHRCKECDKRFDTSRGLINHMRMHERAAKQESVSENENTPQPSQPSKPSEDATDVDDKLSCDKCGKTFKLKIMLKRHHDICTTPPLKELKVSLEPIDGKVGTKIECEICNAKFKSIDNLDKHLRVVHAAAPKKEKVPHTTTQPQTPQPENGKLILPCMYCRKPYADYYSHNAHFNACCKGKYNGFFECPLCHKMVVKKASYFLHIKAHFMQTIPTTPVSAESRKKYDCRICKQKLPSEEELVTHLAAHMSNIEDPDDDGSRASTLDDSASIQSEYSSTKVTTGPLSCGICGKKFTYKKALDSHVAKHSQAEINIKAEPPDKSLNQSSELLTEAAQHSESESSQDEGEDDNTCDICEKQFSYKRLLIQHKRTKHPMTAGTKRAKVNLKDCSVRCLICDIEMKVSAINEHNQTHISKNIKPRNLYTCIICEEKFKSCSTLANHIKLVHRLKQQSSKPQTVAPDLADFCEVVVTKAEPLDLIQSHNGFGEDSAQGGKPLVNLSGFTCPICNKQMPTLISLNRHVNWHTNVGNNIEKKYECFVCKETFRFQCHYKMHMRVHYHDTNLDPKLLTCSICNRKSKHLRAAQAHMNFHKQTRFKTKDYECSICKRVFQYRKVYLSHMAIHYKRGDSANNTIVGSELPTSADKTIFDGTHTCHICRKVCDSETSLKHHIIWHNSKTSLYGNRHTCHICDLQFTNKKRLELHIRLHYEDDNGPYKCHICGKGYTNEDYFKRHVKGHNFDHQSHKKRIEKLRKDKVKCPICARFYPDLLKLIRHLRRTHPESKMIKEDPDAPPPNYFSCKLCAKVFLDERRLQFHEEAHLRKPEFFKCKFCGKKTISLRTHNVHIKSHLAQKYLDKPLDCPHCDQKFTKGWYLHHHLRDAHNIIENWIADRTTQTLNGPLKEFQCSVCLKILASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLTFSCEKKKLIGDTEIYPRRIKCQVCYKAFHLQVKLDCHLRTQHGIKVFKEASESKKDCVCDYCFKVFENEYALNTHKIYHRTVGFYGCIYCDRKFNTMTAYRKHKNHHFSQLNVDNPTKCEHCDETFVPFRDMIYHMRDVHGDDKEWIILPKESIEEKCPICNKIFFNLHRHLDYHEENKCKKCNEYFLSHLDYDNHLCAIDSDDDEAMNASVENGNMPKYEECRFCFKPITRTSSKLKHDQIHKSSGSISCRFCDLKFKTIDAFNIHAFSHRSRKYNKKPIKCRICGEKFVKYGPFMKHMKNVHKNMKKLHYRAVVKEEECVICGDFFPNLHNHYRAHLLHQCQMCHKYFTSFKVFSKHTCDSEDSDPSKVFTSDVDLPTLINTYVPKDERDDEKYYGYTDDEEEEAEAEADVPDEEPESKVRDTKPMLFDENSQITLDDESQNSVDEEESNMHSMVHAPIISDVLSLYQKEEAGTAAQEEADDDVVNLIDEDSVGFEENVLTVITIED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01438246; iTF_01439248;
- 90% Identity
- iTF_01438246; iTF_01082671;
- 80% Identity
- -