Hcom019073.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- -
- Assembly
- GCA_905404135.1
- Location
- FR990026.1:673766-684970[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-10 1.1e-07 32.2 0.0 4 38 147 182 145 187 0.90 2 4 1e-11 8.7e-09 35.7 0.3 4 39 200 235 198 238 0.93 3 4 3.6e-14 3e-11 43.6 0.1 2 45 253 297 252 297 0.96 4 4 1.1e-18 9.1e-16 58.1 0.0 1 43 304 347 304 348 0.96
Sequence Information
- Coding Sequence
- ATGCCGGGCCCGAGGCCGGCGCTGGTCAAGTGCGAGCCGCGCTCCGACGACGAGGACAGTCACTACCACCCGCCCTACATCGCGCACCAGCAGTGCCTGGAGGAGCCGCCGGCGCCGGCCGCGCCCGCCGCCACGCCGGTGCGCGCGCGGCTGCCCGCGCCGCCCGCCGCGCCGCTCGACACGCTCGAGACGCTCGAGCCCGCGCACCCCACGCTGCTGGGTGCCACGCTAATGGATCGGCATGCGAGCTTGCTGTCGGCGGCCGAGCTGCCGGACTCCTCGGACTTTGTACCGCTGCTCTCTGTCAAAGACGAACCGCTGTCTGAAGGAGAACAGCACCAGCTGAGCAGCGACGACACGAGCGACTCGGGTGGCGGCGGGGGCGGGTCTGGAGGGGGCGGGGGTACGCGGGGCTCGCCCAAGACCTGGTCGCAGCGGGACATGGACAGCGCGCTGGACGCGCTCCGGAATCACCGCATGAGTCTCACCAAGGCGTCAGCGCGGTTCGGCATCCCATCAACGACGCTGTGGCAGCGCGCGCACCGCGCTGGCATCGGCACGCCGAAGGACGGCGGCGCGCGCGCGTGGGCCGAGCGCGACCTGCGCGCCGCGCTGCACGCGCTGCGCGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCCTACGGCATCCCTTCGAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCCGACCTGCGCCGCGCGCTCGACGCCATCCGCGCCGGCGCCAGCTCCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCCACCGGCACGCTGTACGGGCGGTGCAAGCGGGAGGGCATCGAGCTGTCCCGCTCCAACCCCACGCCGTGGTCCGAGGACGCCATGGGGGAGGCGCTCGAAGCCGTCAGGGTGGGGCAGATGTCGATCAACCAGGCGGCCATCCACTACAACCTGCCCTACTCCTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGCTACAGGGAGTCCCCCAACACCTGCCGCAGGAGATGTCCCCGGAGGAGGCCCCGCTGGCGGCGCCCCCGGCCGCGGCGGAGCCCTACAGCCACATGTTCCCCGAGTGCGAGCAGTACTACCCCTACATCACCACCAGTTGA
- Protein Sequence
- MPGPRPALVKCEPRSDDEDSHYHPPYIAHQQCLEEPPAPAAPAATPVRARLPAPPAAPLDTLETLEPAHPTLLGATLMDRHASLLSAAELPDSSDFVPLLSVKDEPLSEGEQHQLSSDDTSDSGGGGGGSGGGGGTRGSPKTWSQRDMDSALDALRNHRMSLTKASARFGIPSTTLWQRAHRAGIGTPKDGGARAWAERDLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLRRALDAIRAGASSVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQLQGVPQHLPQEMSPEEAPLAAPPAAAEPYSHMFPECEQYYPYITTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00166849; iTF_00277283;
- 90% Identity
- -
- 80% Identity
- -