Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.1e-11 7.1e-08 32.7 0.0 4 39 72 108 70 112 0.90

2 4 8.3e-13 1.4e-09 38.1 0.3 2 39 124 161 123 164 0.93

3 4 3.9e-15 6.7e-12 45.6 0.0 2 45 179 223 178 223 0.96

4 4 9.8e-19 1.7e-15 57.1 0.0 1 42 230 272 230 274 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.1e-11	7.1e-08	32.7	0.0	4	39	72	108	70	112	0.90
2	4	8.3e-13	1.4e-09	38.1	0.3	2	39	124	161	123	164	0.93
3	4	3.9e-15	6.7e-12	45.6	0.0	2	45	179	223	178	223	0.96
4	4	9.8e-19	1.7e-15	57.1	0.0	1	42	230	272	230	274	0.95

Coding Sequence: GGCTCGAACCTCATGGACCGACATACAACAATGTTGTCGACCACTGAACTGCCGGACTCTTCGGACTTCGTTCCGCTGCTCGCCGTCAAAGATGAACCATTGTCTGAAGGAGAACAGCATCATCTGAGCAGCGACGACACGAGCGATTCCGGAGGGACCCCCGCGGAGGGTCCGCATGGGGTCCGCGGCTCCCCCAAGACCTGGTCGCAGCGAGACATGAACAGCGCCCTGGACGCGCTCAGGAACCACCACATGAGTCTTACCAAGGCATCAGCAACATACGGCATCCCATCAACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGATACGCCGAAGAAGGAAGGCGCCGCCAAGTCCTGGAGCGAGGGAGACCTGCGCGCCGCACTACACGCGCTACGAGCTGGTGCCATCTCCGCCAATAAGGCCAGCAAGGCGTACGGTATCCCGAGCAGTACGCTGTATAAGATAGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCATTCAACGCCGCTCCGACCGCCTGGCGCCGCGCCGACCTGCGGCGTGCGCTCGACGCTATCCGCTGCGGCGCCAGCTCTGTGCAGCGCGCTGCTACCCAGTACGGGATACCCACCGGCACGCTGTACGGGCGGTGCAAGCGAGAGGGTATCGAGCTGTCCCGCTCCAACCCCACGCCCTGGTCCGAGGACGCTATGGGGGAGGCACTGGAGGCCGTCAgAGTGGGCCAGATGTCCATCAACCAGGCAGCCATCCACTACAACCTGCCGTACTCCTCGCTGTACGGCCGGTTCAAGCGCTGCAAGTATCAGATACAGGGGATCCCATCGCAGCACCAGCCAGAGGAGTCCCCGGGGCAGTACCCAGTATACCAGCCAGCGGAGCCCTACAGCCACATGTTCCCGGAGTGCGAGCAGTACTACCCCTGCAGTGGTATCACCACCAGTTGA
Protein Sequence: GSNLMDRHTTMLSTTELPDSSDFVPLLAVKDEPLSEGEQHHLSSDDTSDSGGTPAEGPHGVRGSPKTWSQRDMNSALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEGDLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLRRALDAIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIQGIPSQHQPEESPGQYPVYQPAEPYSHMFPECEQYYPCSGITTS

Sequence clustering based on sequence similarity using MMseqs2