Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 7.7e-11 1.1e-07 31.6 0.0 4 39 146 182 144 186 0.90

2 4 2e-11 2.8e-08 33.5 0.2 3 39 199 235 197 238 0.90

3 4 8.1e-15 1.1e-11 44.3 0.0 2 45 253 297 252 297 0.96

4 4 3.6e-19 5e-16 58.3 0.0 1 43 304 347 304 348 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	7.7e-11	1.1e-07	31.6	0.0	4	39	146	182	144	186	0.90
2	4	2e-11	2.8e-08	33.5	0.2	3	39	199	235	197	238	0.90
3	4	8.1e-15	1.1e-11	44.3	0.0	2	45	253	297	252	297	0.96
4	4	3.6e-19	5e-16	58.3	0.0	1	43	304	347	304	348	0.96

Coding Sequence: ATGCCGGGGTACGAGCCGAGATCAGTCAAGTGCGAGCCGGCGTCCGATGACGAAGACACGCACTACATCCCAGCCTACACCTGTAACCAGCACTGCGCGGCGGGCCCGCTGGAGGAGCtgccggcgcccgccgcgcccgtcgccacgcccgtgcgcgcgcgcctgcccgcgccgcccgcgtccgcCGCCTCGCTCGAGACGCTGGAACCCGCGCCGCACTCCTCCCTGCTGGGCTGCACCCTCCTGGGCCGGCGCGCCAGCATGCTTGTCACCAATGAAATGCCAGACTCCTCAGATTTCGTGCCGCTGCTCTCTGTCAAAGATGAACCTCTCTCTGAAGGAGAGCAACATCCCCTGAGCGGCGACGACACGAGCGACTCCGGCGGGGCGGGCGAAGCGCCCGCGCGCGGCTCGCCCAAGGCCTGGTCGCAGCGGGACATGGACTGCGCCCTCGACGCGCTCCGGAACCATCACATGAGTCTCACCAAGGCGTCAGCCACGTACGGCATCCCGTCGACGACGCTGTggcagcgcgcgcaccggctCGGCATCGACACGCCCAAGAAGGACGGCGCCGCCAAGTCCTGGAGCGAGCAGGACCTGCgcggcgcgctgcacgcgctgcgcgCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCTTACGGCATCCCCAGCAGCACGCTATACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCCGCGCCCACCGCGTGGCGCCGcgccgacctgcgcgccgcgctcgacgccatccgctgcggcgccagctccgtgcagcgcgccgccacgcaGTTCGGCATACCCACCGGAACGCTGTACGGGCGGTGCAAGCGGGAGGGCATCGAGCTGTCTCGCTCGGCGCCCACGCCGTGGTCGGAGGACGCCATGGGCGAGGCGCTCGAGGCCGTCAGGGTTGGGCAGATGTCCATCAACCAGGCGGCCATCCACTACAACCTGCCGTACTCGTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGCTTCAGGTAAAAAGAACATCAAGCAAGTGA
Protein Sequence: MPGYEPRSVKCEPASDDEDTHYIPAYTCNQHCAAGPLEELPAPAAPVATPVRARLPAPPASAASLETLEPAPHSSLLGCTLLGRRASMLVTNEMPDSSDFVPLLSVKDEPLSEGEQHPLSGDDTSDSGGAGEAPARGSPKAWSQRDMDCALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGAAKSWSEQDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLRAALDAIRCGASSVQRAATQFGIPTGTLYGRCKREGIELSRSAPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQLQVKRTSSK

Sequence clustering based on sequence similarity using MMseqs2