Htar026153.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243849.1:9951618-9952229[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-09 3.3e-07 30.9 0.0 1 38 8 46 8 51 0.93
Sequence Information
- Coding Sequence
- ATGCCGAAGATACCCCAATATACAAAAGAAGCCCTTGACGAGGCATTAGAAAAAATAAACACAAAAACAATGTCTTTGAGAGCAGTCGCAAAAAAATATAATATACCCAGAGCTACTTTACAGTTTAAACTAAAAAATCCTACTTCAAAATCTCAATTTGGACCAATACCGTATTTGACATATGAGGAAGAAAATACCATCGAAGAATGGTTAGTAAATATGGCTCGTAAAGGCTTCCCTAGGAAGTCAGATGCCGTTCTCGACACAGTTCAAAAATTTTTGATTGACAATCCACGCGCTACTCCTTTTTTGAATAATAGGCCTGGGGTGGGGTGGCTTAAAGCTTTTTTAAAACGTCACCCTCGTTTGGTTCAAAGAACCAGCGAAGGAGTCACTAAAGCCAGCGCATGCGTCTCTGAAGCTGATATAAAGAAATGGTTTCTTGAAATAAAGAATTACTTGACAAGTGAAAACCTGCTAGAGGCAATTAACGATCCACATCGTGTTTTCAACGCCGACGAGACAGGATTTCAGCTATGTCCTTCTATTGGTCGTGTGCTTGCTGCTAAGGGAGACAAAAATATTTATGCTGTGGAACAAGGAAATTCCTAA
- Protein Sequence
- MPKIPQYTKEALDEALEKINTKTMSLRAVAKKYNIPRATLQFKLKNPTSKSQFGPIPYLTYEEENTIEEWLVNMARKGFPRKSDAVLDTVQKFLIDNPRATPFLNNRPGVGWLKAFLKRHPRLVQRTSEGVTKASACVSEADIKKWFLEIKNYLTSENLLEAINDPHRVFNADETGFQLCPSIGRVLAAKGDKNIYAVEQGNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00825605; iTF_00256857; iTF_00237402; iTF_00035585; iTF_01332498; iTF_00433075; iTF_00035583;
- 90% Identity
- iTF_00035585;
- 80% Identity
- -