Bvim045595.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- cheC
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000711.1:165363-166046[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-11 1.3e-08 36.0 0.0 1 38 22 60 22 64 0.93
Sequence Information
- Coding Sequence
- atgtttatttttctgttctatcaggttaaattaaaaataatcattcCAAAGAGACCTCAGTACACCAAAGAAGCCCTAGATGAGGCGTTAGAAAACATTCAGAATAAAACAATGTCTTTAAGAgcagttgcaaaaaaatataatatacccAGGGCAACTTTacaatttaaacttaaaaatcccACTTCTAAATCTGAGTTTGGACCGACGCCGTATTTAACCCATAAGGAAGAAGATTCCATCAAGGAATGGCTGTATAAAATGGCCCGGAAAGGCTTTCCAAGAACACCAGATGATGTTCTTGATACTGTACAAAATTTTTTGTCTGATAATCCACGAGAAACTCCTTTTGTTAATAACAGACCTGGACAAGGATGGCTAAAGGCTTTTTTAAAACGTCATCCTAGTTTGGCTCAGAGAACCAGTGAAGGAGTTACTAAAGCTAGTGCCTGCGTTTCCGAAAATGATATTAAAAAATGGTTTCTGGAAATCAGAAATTACTTAACCAGTGAAAACCTGCTAGATGCGATTCAAGATCCACACCGTGTTTTTAATGCAGACGAAACAGGATTCCAGACTTGTCCTTCACAACATTTCTGTCTCATTTTGGAGCAAGTACACGACCAGTGTACTTGCTCCAAAATGAGACAGAAATGTTTATTCAGTTCAACAAGGATattctaa
- Protein Sequence
- MFIFLFYQVKLKIIIPKRPQYTKEALDEALENIQNKTMSLRAVAKKYNIPRATLQFKLKNPTSKSEFGPTPYLTHKEEDSIKEWLYKMARKGFPRTPDDVLDTVQNFLSDNPRETPFVNNRPGQGWLKAFLKRHPSLAQRTSEGVTKASACVSENDIKKWFLEIRNYLTSENLLDAIQDPHRVFNADETGFQTCPSQHFCLILEQVHDQCTCSKMRQKCLFSSTRIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00794367;
- 90% Identity
- -
- 80% Identity
- -