Astr031225.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- cheC
- Assembly
- GCA_950108535.1
- Location
- OX467327.1:4866522-4867190[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-09 2.7e-06 28.0 0.0 4 38 11 46 8 52 0.91 2 2 5.6 5.2e+03 -1.8 0.0 2 10 156 164 155 165 0.83
Sequence Information
- Coding Sequence
- ATGCCGAAAATACCCGAGTACACAAAACAGGCCCTTGACGAGGCATTAGAAAAAATAAGCACAAAAACATTGTCTTTGAGAGCAgtcgcaaaaaaatataacataccAAGAGCTACTTTACAGTTTAAACTAAAAAATCCTAATTCAAAATCTCAATTTGGACCAACACCGTATTCGACATATGAGGAAGAAAATACCATCGAAGAGTGGTTAATTAAAATGGCTCGTAAAGGATTTCCTAGGAAGTCAGATGACGTTCTCGACACAGTTCAAAAATTTTTGACTGATAATCCACGCGATACTCCTTTTCTCAGTAATAGACCTGGTCGCGGGTGGCTCAAAGCTTTTTTAAAACGTCACCCCAGTTTAGTTCCAAGAACTAGCGAAGGAGTCACTAAAGCAAGTGCCTGCGTATCTGAAGCCGATATAAAGAAATGgtttcttgaaataaaaaattacttgaCAAGTGAAAACCTGTTGGAGGCAATTCATGATCCACAACGTGTTTTTAACGCTGACGAGACAGGATTTCAGCTTTGTCCTTCTACTGGTCGCGTGCTTGCTGCTAAAGgagacaaaaatatttatgctGTGGAACAAGGAAACTCCAAAGAAAATGTTACAGTCCTATTTACATTTTCTGCTGACGGTAAGACGTGTCCTCCTTAA
- Protein Sequence
- MPKIPEYTKQALDEALEKISTKTLSLRAVAKKYNIPRATLQFKLKNPNSKSQFGPTPYSTYEEENTIEEWLIKMARKGFPRKSDDVLDTVQKFLTDNPRDTPFLSNRPGRGWLKAFLKRHPSLVPRTSEGVTKASACVSEADIKKWFLEIKNYLTSENLLEAIHDPQRVFNADETGFQLCPSTGRVLAAKGDKNIYAVEQGNSKENVTVLFTFSADGKTCPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00794367;
- 90% Identity
- iTF_01332498; iTF_00035583; iTF_00794367;
- 80% Identity
- -