Htar023706.2
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- retn
- Assembly
- GCA_945859575.2
- Location
- OX243847.1:16278094-16294306[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-19 4.2e-16 60.1 0.0 17 89 61 131 50 131 0.94 2 2 4.7 2e+04 -2.9 0.0 25 37 261 273 222 275 0.53
Sequence Information
- Coding Sequence
- ATGGTCATAAAAGTTGCAATAGCCCGTAGAAATGTTGCGTGCAAACCACCTGTACCGAACCCACTAAGGACTATTATGTACTACATTAATATATGGAATGAAGTAATAGAAATAGTAGAAAAAGTAGAAGATGAACTGTTGCTTGATGAAATTACAAATAAAGTTACTTTTAATTATATAGGAACACCGATCAACCGATTGCCAATAATGGCCAAGTCAGTCCTGGATCTATACGAGCTGTATAACTTGGTTATAGCCCGCGGAGGTCTGGTCGAAGTGATCAACAAGAAACTCTGGCAGGAGATCATCAAAGGGTTGAGACTACCATCTTCCATCACATCAGCTGCTTTTACGTTACGCACACAGTATATGAAGTATCTGTACGACTATGAATGTGAGAAGAAGAATCTGTCGACTCGGAGTGAGTTGGACGCGGCTATTGAAGGCAATAAGCGGGAGGGTAGACGCGCTTCTGGACAGTACGACGCACAAGCTGCATTAGCTATGCCGCCTCTGAATCGTGGCGTGCCGGCTTCATTAGCGCAGCTCTCGCAGCATATGCAACCTTTGTCTCTTTCACTTGGTGGAGTTGCGCCGCGTCTACCGCCGTTACCACCGCACGCGCCGCATTTAGCTCAGCATGACATAGAGTATAGAGTACGGGAGTATATGAAGATGATACAGCAGCAGAGAGAACTTATGAGAAATGGTTCCGAGTCACCGCCAAGCGTGAATGGTCCGGCGCCGATCATGTCACCGCGCGACGCCGCTGCTCTCAGCGCCATCGACGTGTCACGCCTCACCCTCTGGTCACTCTACAACAACAATAACAACAACAGTCCACAACCTGATCTCGAACCACAACGAGAGGCATTAAACCTGAGCGAGAGCCCGAACTCTAGCGCGTCTGGCGGCAAGCGCGAGGCCTGCCGCTCGCCGGCGCCAGCCGCCAAGCGCCGCACGCCGCGGCCCGCGTCGCCGCGCGCGTCGCCGCCCGCGCCCGCGCCGCGCGCCGCGCGCCTCGACCCGCCCTCGCCGCCGCACGGGCTCAACGGACCCAGCTCCAATGGAGTCAACGGTGCCGCGTTCAAGATCACTACTAGAGGTGATGCCAGTACGGGTGACCAACAGCTGGTAGTGTCAATAGAATTGAACGGCGTCACGTACGAAGGCGTACTGTTCCCCGCCAATAACTCACAGAACGGACACAGGCAAATGGTCTCTTAA
- Protein Sequence
- MVIKVAIARRNVACKPPVPNPLRTIMYYINIWNEVIEIVEKVEDELLLDEITNKVTFNYIGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRGVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSVNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSSASGGKREACRSPAPAAKRRTPRPASPRASPPAPAPRAARLDPPSPPHGLNGPSSNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPANNSQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00636054;
- 90% Identity
- iTF_00677326;
- 80% Identity
- -