Htar012648.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- Rfx2
- Assembly
- GCA_945859575.2
- Location
- OX243838.1:4108064-4126666[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-38 1.4e-33 116.4 0.0 3 78 119 194 117 195 0.97 2 2 0.66 1.2e+04 -2.0 0.0 24 33 532 541 514 552 0.65
Sequence Information
- Coding Sequence
- ATGCGAGTTGCCTGGGAGATCTCTAGCGGCATGGAGGTGCCCCGGTACCGATCTTATTACCCCTGCGAGGGAGGTAACGGCGTTAACTATCATGTGCAGTATGTCACCGAGCCTCAAGAAATATACACTCAAGGTCACCAGACTCATATGGAGACCCTTCGCACGTACCCCGTGTATGGAGTGACGACTGTAGGCAACGGCACTACGGCGGAAGGTACTTCTGCAGACAGCGGCTGGGGGGGCGCGTCCTCTGCGGAGTACACCGCGTATGGAGTCGTTGTGGCCGGCGACGAGGCGGAGGCGCCGGCGTCGCCCGCCACGCCCGCCGGCCCGGCGCCGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACTGCCGAAGGCGTATCTCTTCCCCGTTCAACATTATACGCGCACTACCTCCGCCACTGCGCGACACACCGCCTCGAGCCCGTCAACGCGGCGTCCTTCGGCAAGCTCATCCGCTCCGTGTTCGTCGGGCTCCGGACGCGCCGGCTCGGCACTAGGGGGAACTCTAAGTACCACTACTATGGCATCAGAGCTAAGCCGGGGATCGATCAGGATCATAGTGACGTCAGGGACGAAGGACAAGAGCAGGCCGATAATGCTGATGATAAAACGGATGTGTTGGACCATCAGGAGGGTAGAGGCCGCGAGCGTGCCCGCGCTACGAGCCCGACCGTGAACCAACACCGGCAGTACCTCGGCGCCGTGTCGCCGCCCGAGCCGCCGCCGCTCAGCATCATGGACCTGCCCGACGACGTGCCGCATGACGCGCTCGACGCACTACGGAGACATCACAGGGAACACGGCGTGGAATTTTTGGAAGCCGTAGCGGCTCTAGACATAGGCGCGGTGGAGCGAGCTCGCCGCGCGTTCTGGCGACGGCCGCCCGCCGCGCTGTGCCGCCGCGTGCTGTGCAAGCTGACGTCACGGCGGGACGTGGCCGCCTGGCTGCGACTCGCCGAGCTGCAGCTGTATCAGCGTGCTGTGGAGCTGTTGCTGCCCGACGTGCTGCGGCCTATACCGCCGCAGTTGACTCAGTCCATCCGCAACTTCGCGAAGAGCCTGGAAGGCGCGCTGTCGGCGGGCGCGGGCGGCGCGCCGGGCCCGGCGGCGCGCGCGCAGGGCGCGGCGGCCGCGGCGCTGGCGGCGGCGCTGCGCCGCTACACGTCGCTCAACCACCTGGCGCAGGCCGCGCGCGCCGTGCTCACCAACCACCACCAGATACACCAGATGTTAGCAGATCTGAACCGCGTGGACTTCCGCGTGGTACGTGAGCAGGCGGCGTGGGCCTGCTCGTGCGGCAGTGCCGCTACTGCACACAAACTCGAAGCTGATTTCAAGGCGACGCTAGGTCGCGGCGCGTCTCTGGAGCAGTGGGCGGGCTGGCTGGAGGGCTGCGTGCGCACGGCGCTGGCGCCGCACGAGCGCCGCGCAGACTACACCGCGCGGGCTCGCCGGCTGCTGCTCGACTGGTCCTTCTACTCGTCGCTCGTCATACGCGAGCTCACGCTCAGGTCGGCGGCGTCGTTCGGCTCGTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTGATCGAGCGCCGCGTGGCCGCGCACCACCACGTGCCCTGCATCGCCGTCATGCAGAGAGTGCTCGAACAGCCTGAGGAAGAAGAAGTGACAGACGATCCTCTACGCGCGGAGCCTGACGACGACGAACAGGATTGGGAGTGGGACGACGACGAAGAAGAAGAGGAGGAACCCGAGTGCAAGAAACCTAGGGCTTCGGAGTAA
- Protein Sequence
- MRVAWEISSGMEVPRYRSYYPCEGGNGVNYHVQYVTEPQEIYTQGHQTHMETLRTYPVYGVTTVGNGTTAEGTSADSGWGGASSAEYTAYGVVVAGDEAEAPASPATPAGPAPPRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCATHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPGIDQDHSDVRDEGQEQADNADDKTDVLDHQEGRGRERARATSPTVNQHRQYLGAVSPPEPPPLSIMDLPDDVPHDALDALRRHHREHGVEFLEAVAALDIGAVERARRAFWRRPPAALCRRVLCKLTSRRDVAAWLRLAELQLYQRAVELLLPDVLRPIPPQLTQSIRNFAKSLEGALSAGAGGAPGPAARAQGAAAAALAAALRRYTSLNHLAQAARAVLTNHHQIHQMLADLNRVDFRVVREQAAWACSCGSAATAHKLEADFKATLGRGASLEQWAGWLEGCVRTALAPHERRADYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAAHHHVPCIAVMQRVLEQPEEEEVTDDPLRAEPDDDEQDWEWDDDEEEEEEPECKKPRASE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00821513;
- 90% Identity
- iTF_01501825; iTF_01491604;
- 80% Identity
- -