Hmer004305.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- -
- Assembly
- GCA_951812935.1
- Location
- OX638358.1:51339656-51342262[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.019 92 4.2 0.0 17 45 66 95 59 99 0.77 2 14 0.00057 2.8 9.0 0.2 20 44 126 150 118 158 0.89 3 14 1.2 5.8e+03 -1.6 0.0 23 43 157 177 152 181 0.83 4 14 0.057 2.8e+02 2.6 0.0 21 45 239 263 230 269 0.81 5 14 0.0031 15 6.7 0.1 22 46 324 348 315 352 0.88 6 14 0.071 3.5e+02 2.3 0.1 22 45 373 396 354 402 0.83 7 14 0.29 1.4e+03 0.4 0.1 22 46 400 424 397 429 0.85 8 14 0.0055 27 5.9 0.0 25 45 589 609 583 615 0.89 9 14 3.4 1.6e+04 -3.0 0.0 27 45 647 665 646 673 0.85 10 14 0.0037 18 6.4 0.0 22 44 670 692 667 701 0.88 11 14 1.4 6.7e+03 -1.8 0.0 23 45 699 721 693 725 0.83 12 14 5.7 2.8e+04 -3.8 0.1 23 30 783 790 780 792 0.76 13 14 0.33 1.6e+03 0.2 0.1 22 47 810 835 803 841 0.65 14 14 0.049 2.4e+02 2.9 0.0 26 46 842 862 836 865 0.87
Sequence Information
- Coding Sequence
- ATGGAAGAATCAAAGAACATTAAAAACGAATATACAACCACCCACAATCCAGATGAAATTTCTAAAACCCAAGAAGCCTTAAAAGTCGAAGAATTTGACAAAACCTACGTTAAAGCCgaagatgaaataaataaatccgaaaataatgtaaaaaatattataaaatcagACGATGACAGTGACGAAGATGACAAGAGTAAAAGTAgtcataaaaagaaaaaatatggttGTACCTTATGTTTCGCAAGTTTTGACAAAACCGTCCTCCTTAAAAGGCATTTACGATCCCAtccagaagaaaaaaaatacagatgCAACTCTTGCAATCGTAGTTTCGGCCATTTTGGACACTACAAGCGGCACATGGTCAGTCACACTAGCGAAAGAAATTACATTTGCGAAATTTGTAGCAGCAGCTTCCGCCAcgaagataatttaaaaagacataTATTAATTCATACcggagaaaaaaattatagatgtGCTACATGTGGAAAAGCTTTCACCCAAAGCTCTTCACTTAAACAACATTACATCACTCATAATGGagagaaaaaattcaagtgtgAAACTTGTAAAAAGTGTTTTAGCAGGATGAATGCTTACAAGAAACATTTGTTGATTCACACTGGCGAGAAGAAgtttaattgtaatatatgtGGGAAAGCTTTCTATGGAAAACGAGATGTTATTCGTCATAGGGTTACGCACACAGGAGAAAAGAATTACATTTGTCCAATTTGTGGTCATGGTTTCGGCCACGAAAATTCCTTAAGAATGCACCTTCTTATACATTCCGGAAAAAGAAAACACAAGTGCAACATTTGCGAAAAGTCTTTCTTCACTAACGCAGCTTTAAAATCGCACCAAATAAGTCACACAGGCGAGAAGAACTACAAATGTGAAATTTGCCATAATAACTTCGCTTATCTAAACACTTACAAGAAGCACATGCTAACTCATACCGGCGAGAAAAAGTATAAATGCCACATTTGTGAAACCGCATTCACTCAAAGCTACTGTCTTTCAAGGCATCTCAAAATTCACACTAGGGAAAACTCTACTTCGAAAATTCGCGAACGTGAGAAAACTGAAACTCTAATAACTCGTCCAGgtgagaaaaattttaaatgtgaaatttgcgGCAGCACTTACGcccatctaaaaaattataaaaggcaCTTACTAGTCCATACCGAAAAGAAATTCAAGTGCAGTATTTGCGATAGGGGCTTCACAAGAAGTTTTTGTCTAAAAAGGCATTACAAAATCCATATTACCGAGAAGAAATCTGAGGCACCGACAGCTCCAAGTGCACCACCAGGTGCATGTGCACCAACAGATGATTTAATACTACAGAACAGTCCACAGcttgtaaaaatagaaaatgttccaATAAACAACTATGTCGAAGCATACAACCAGTCAGTAGAAGAGAACAATGTTGAAGTAGACGTTAAAACTACTTCAAGAAATGACTGTGACTCTCAACAAAATACAGACTGGTCTACAGATATAAACTCAAATTCACAGGATAGTTTCTTATTTACTATGGATAATTATGGTTCgaatgataatgatgatgatgatgataaagaTGATACCTTTGAAGAATACGAAAAAAATGAAACTGAAAATGAAGCTGCTAATGAAATAATTCCTGAAGAAGTTACGTCTGAAAATGCAAACTCAAATCCTGACGACATAGAAGTGGATATCAAGAAGTTATTAAATTACGAGTACGCAGAAGATGGTAAAAAGAAGTATACGTGTACCTTATGCTTCGCAGAATTTGATAAAACAGTCCATCTTAAAAGACATCTTAGAACTCATCcggaaaaaaagaaatacaaatgcATTGCTTGTAATCAGAGTTTCGGTCACTTCGGGCATTTTAAACGACACGTTCTGACACATACcggtattaaaaattatatctgtgAAGTATGCAGTAAAGGATTTCGATTAGAAGACACCTTAAAGAAACATCTTCTGATTCATACGggagagaaaaaatataaatgcacaatttgtgaaaagaCCTTTACTCAGAGCTCCACTCTAAGACAGCATCTTGTAACTCACACAGGTGAAAAGAAGTACAAATGTAACACTTGCAATAAGAATTTTGGACAAGTAAGTAACtataaaaaacacttgttaATACATACTGGGGTGAAGAAATTCAAGTGTAACTTCTGTGATAAGGCCTTTTACGATACGGCTTGCTTAAAACGTCACAGATTAATACATACTGGCGAAAAGAACTTTATGTGTAACATCTGCAATAGAAGTTTCAGCAGAGAAAAATGCCTGAAGAGCCACCAAGCGATTCACACCGGAGAGAAGAAATATAAATGCCCCGTTTGCGAGAAATCCTTCTTCACTTACTCCGGCTTAAAAAGCCACGAAATAAACCACACGGGAGAACAAAAATATCAGTGCGAGACGTGTAACAAGTGTTTCATTCACAAGAGCAATTACAAAAAACATCTGGCGATTCATGATGTCGATAAAAAGTTTAAGTGTCCGGTTTGTAATAAGGGATTTTATCGTAGTGATCATTTAAAGAAGCATCTAATGCGAATGCACGGAAGGgctgaataa
- Protein Sequence
- MEESKNIKNEYTTTHNPDEISKTQEALKVEEFDKTYVKAEDEINKSENNVKNIIKSDDDSDEDDKSKSSHKKKKYGCTLCFASFDKTVLLKRHLRSHPEEKKYRCNSCNRSFGHFGHYKRHMVSHTSERNYICEICSSSFRHEDNLKRHILIHTGEKNYRCATCGKAFTQSSSLKQHYITHNGEKKFKCETCKKCFSRMNAYKKHLLIHTGEKKFNCNICGKAFYGKRDVIRHRVTHTGEKNYICPICGHGFGHENSLRMHLLIHSGKRKHKCNICEKSFFTNAALKSHQISHTGEKNYKCEICHNNFAYLNTYKKHMLTHTGEKKYKCHICETAFTQSYCLSRHLKIHTRENSTSKIREREKTETLITRPGEKNFKCEICGSTYAHLKNYKRHLLVHTEKKFKCSICDRGFTRSFCLKRHYKIHITEKKSEAPTAPSAPPGACAPTDDLILQNSPQLVKIENVPINNYVEAYNQSVEENNVEVDVKTTSRNDCDSQQNTDWSTDINSNSQDSFLFTMDNYGSNDNDDDDDKDDTFEEYEKNETENEAANEIIPEEVTSENANSNPDDIEVDIKKLLNYEYAEDGKKKYTCTLCFAEFDKTVHLKRHLRTHPEKKKYKCIACNQSFGHFGHFKRHVLTHTGIKNYICEVCSKGFRLEDTLKKHLLIHTGEKKYKCTICEKTFTQSSTLRQHLVTHTGEKKYKCNTCNKNFGQVSNYKKHLLIHTGVKKFKCNFCDKAFYDTACLKRHRLIHTGEKNFMCNICNRSFSREKCLKSHQAIHTGEKKYKCPVCEKSFFTYSGLKSHEINHTGEQKYQCETCNKCFIHKSNYKKHLAIHDVDKKFKCPVCNKGFYRSDHLKKHLMRMHGRAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00792366;
- 90% Identity
- iTF_00792366;
- 80% Identity
- iTF_00792366;