Hmer012008.2
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- Zfy2
- Assembly
- GCA_951812935.1
- Location
- OX638360.1:50776359-50778530[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 3e-05 0.15 13.1 0.0 21 49 257 285 251 288 0.93 2 6 0.0019 9.3 7.4 0.5 7 45 312 349 308 352 0.83 3 6 0.0057 28 5.9 0.0 21 44 353 376 349 380 0.92 4 6 4.3 2.1e+04 -3.4 0.4 25 33 414 422 409 427 0.78 5 6 0.39 1.9e+03 -0.0 0.1 24 48 462 486 457 488 0.75 6 6 5.6e-05 0.28 12.3 0.3 22 48 489 515 484 517 0.90
Sequence Information
- Coding Sequence
- ATGGAAAATGGGAAAAAAACCGAAATTTGTGTggaaaatttctcaaaaatatgCAGAATATGCCTTCTTCCAAATGAGTTGATACCAATAAATTCaatagataatttaaatatttttgaaaatattacaaatatagaggtGAAAAATAATGACGGACTTCCTGAGAGTATCTGCAAAATTTGCAGCAATCttcttaaagaaattaaaatatttattgatcaGTCTAGAGATAATTATTCCATACTTAAGTTAGCACTAAATGAAACAAATGATAATAGATCGTATGATGTCATTTGTGAACCTAAATATGAACGTACAGAAAATTCTCTAATTAAAAGTGaacaaaaccaaaataaagATAATGGTTCAGAACAAGAATCAGAAACCAAACTGAAAAgtgatgaaaatgaaatatttcaatgtgCCCAATGTGATATGacatttttggttaaaaaattattaatattacatattgaagaaaaacataatacaaatctaatttctaataataactgTAAAAAGTGCAATATGGtatttgaTTCAAAAGTATTATTACTGAAACACAGAAGGTTACacaggagaaaaaaaaataaaaaagttaaaaatatcaaGTATAATTGTACTGAATGTGATCGTATTTTGACTTCACAATCAGCATTGGACAATCACATGAAAACACATACTGGAGATAGGCCTTACAAATGTTCATATTGCGATAAAAACTTTGCATTTTCTGGAAGCCTTACTGTGCATACCCGCATTCACACAGggGAAACTCCTTATCAATGCGCCATATGCAATAAAGGATATCGTAGCTCCAGCAGTCTTAAAAAACACAAGGAGAAGAAACATTTTGACTTAAAATCTTTTAATGATAAGGGTTGGAAAGATTTAGAAAAAGTACAATGCAAATTTTGCAACAAAATGCTGCACAAACACGGTTATGGCACCCATATGAGAATTCACAAGAATGAAAAGCAAGAACGTATATGTCCTTTTTGTTCTAAACATTTCAAGAAATCCTCCCACCTAGAGAGACACGTCAGGATTCATACAGGTGAACGCCCTTTTACCTGCATATTGTGTAAAAAGTCTTTTACACAGGAAGGCGACCTAAAGAGGCACTGGGCGAGCCACTCTGGTCAGAAAGAATACCAGTGTCAGCATTGTGGCAGGTTGTACTCGACAAAAAGCGCCTTGGACACCCACATTACCACAAGTCACGCCGCTGCGAAAAAATCAAACTGTGATATCTGCAAGGCAGCATGTAAATGCGATAAATTATCAACTGAACATAGATCCTTTCTGTGCACCATTTGTGGAAAATCTTTTACGGCGGGTAATAGCCTAAAAGTGCATATAAGGCTACATACAGGGGACTGTCCATTTGTCTGCACTTACTGTGGCAAAGGTTATATAAGTACCAGTAACTTGAAAAGGCATGTTATGAGAAATCACACATTGGAAAGACCTCATGTTTGTATGATATGTCACAAGGGTTTCCACGATTCTACAAATTTGAAACGCCACATTAACAGAGTGCATTCTGTGCTTGAAATAAAAGATAGAAATGAAGATACTCCCACTGTAAATGAAGCTAAAATCCAGTAA
- Protein Sequence
- MENGKKTEICVENFSKICRICLLPNELIPINSIDNLNIFENITNIEVKNNDGLPESICKICSNLLKEIKIFIDQSRDNYSILKLALNETNDNRSYDVICEPKYERTENSLIKSEQNQNKDNGSEQESETKLKSDENEIFQCAQCDMTFLVKKLLILHIEEKHNTNLISNNNCKKCNMVFDSKVLLLKHRRLHRRKKNKKVKNIKYNCTECDRILTSQSALDNHMKTHTGDRPYKCSYCDKNFAFSGSLTVHTRIHTGETPYQCAICNKGYRSSSSLKKHKEKKHFDLKSFNDKGWKDLEKVQCKFCNKMLHKHGYGTHMRIHKNEKQERICPFCSKHFKKSSHLERHVRIHTGERPFTCILCKKSFTQEGDLKRHWASHSGQKEYQCQHCGRLYSTKSALDTHITTSHAAAKKSNCDICKAACKCDKLSTEHRSFLCTICGKSFTAGNSLKVHIRLHTGDCPFVCTYCGKGYISTSNLKRHVMRNHTLERPHVCMICHKGFHDSTNLKRHINRVHSVLEIKDRNEDTPTVNEAKIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00792410;
- 90% Identity
- iTF_00792410;
- 80% Identity
- iTF_00792410;