Hmer012008.2
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- Zfy2
- Assembly
- GCA_951812935.1
- Location
- OX638360.1:50776359-50778530[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.039 4.6 8.8 0.2 1 23 139 162 139 162 0.93 2 12 0.00016 0.019 16.3 1.6 3 23 172 192 171 192 0.97 3 12 6.1e-06 0.00072 20.8 0.4 1 23 205 227 205 227 0.98 4 12 8.8e-07 0.0001 23.4 1.1 1 23 233 255 233 255 0.99 5 12 6.5e-06 0.00076 20.7 2.0 1 23 261 284 261 284 0.96 6 12 0.49 58 5.3 4.9 2 23 302 322 301 322 0.97 7 12 1.4e-05 0.0016 19.6 4.7 3 23 331 351 330 351 0.97 8 12 0.00012 0.014 16.7 0.6 1 23 357 379 357 379 0.94 9 12 1.8e-05 0.0022 19.3 2.0 1 23 385 408 385 408 0.98 10 12 1.9e-05 0.0023 19.2 0.3 1 23 435 457 435 457 0.95 11 12 7e-07 8.3e-05 23.7 0.8 1 23 463 486 463 486 0.97 12 12 5.2e-05 0.0062 17.8 5.2 1 23 492 515 492 515 0.96
Sequence Information
- Coding Sequence
- ATGGAAAATGGGAAAAAAACCGAAATTTGTGTggaaaatttctcaaaaatatgCAGAATATGCCTTCTTCCAAATGAGTTGATACCAATAAATTCaatagataatttaaatatttttgaaaatattacaaatatagaggtGAAAAATAATGACGGACTTCCTGAGAGTATCTGCAAAATTTGCAGCAATCttcttaaagaaattaaaatatttattgatcaGTCTAGAGATAATTATTCCATACTTAAGTTAGCACTAAATGAAACAAATGATAATAGATCGTATGATGTCATTTGTGAACCTAAATATGAACGTACAGAAAATTCTCTAATTAAAAGTGaacaaaaccaaaataaagATAATGGTTCAGAACAAGAATCAGAAACCAAACTGAAAAgtgatgaaaatgaaatatttcaatgtgCCCAATGTGATATGacatttttggttaaaaaattattaatattacatattgaagaaaaacataatacaaatctaatttctaataataactgTAAAAAGTGCAATATGGtatttgaTTCAAAAGTATTATTACTGAAACACAGAAGGTTACacaggagaaaaaaaaataaaaaagttaaaaatatcaaGTATAATTGTACTGAATGTGATCGTATTTTGACTTCACAATCAGCATTGGACAATCACATGAAAACACATACTGGAGATAGGCCTTACAAATGTTCATATTGCGATAAAAACTTTGCATTTTCTGGAAGCCTTACTGTGCATACCCGCATTCACACAGggGAAACTCCTTATCAATGCGCCATATGCAATAAAGGATATCGTAGCTCCAGCAGTCTTAAAAAACACAAGGAGAAGAAACATTTTGACTTAAAATCTTTTAATGATAAGGGTTGGAAAGATTTAGAAAAAGTACAATGCAAATTTTGCAACAAAATGCTGCACAAACACGGTTATGGCACCCATATGAGAATTCACAAGAATGAAAAGCAAGAACGTATATGTCCTTTTTGTTCTAAACATTTCAAGAAATCCTCCCACCTAGAGAGACACGTCAGGATTCATACAGGTGAACGCCCTTTTACCTGCATATTGTGTAAAAAGTCTTTTACACAGGAAGGCGACCTAAAGAGGCACTGGGCGAGCCACTCTGGTCAGAAAGAATACCAGTGTCAGCATTGTGGCAGGTTGTACTCGACAAAAAGCGCCTTGGACACCCACATTACCACAAGTCACGCCGCTGCGAAAAAATCAAACTGTGATATCTGCAAGGCAGCATGTAAATGCGATAAATTATCAACTGAACATAGATCCTTTCTGTGCACCATTTGTGGAAAATCTTTTACGGCGGGTAATAGCCTAAAAGTGCATATAAGGCTACATACAGGGGACTGTCCATTTGTCTGCACTTACTGTGGCAAAGGTTATATAAGTACCAGTAACTTGAAAAGGCATGTTATGAGAAATCACACATTGGAAAGACCTCATGTTTGTATGATATGTCACAAGGGTTTCCACGATTCTACAAATTTGAAACGCCACATTAACAGAGTGCATTCTGTGCTTGAAATAAAAGATAGAAATGAAGATACTCCCACTGTAAATGAAGCTAAAATCCAGTAA
- Protein Sequence
- MENGKKTEICVENFSKICRICLLPNELIPINSIDNLNIFENITNIEVKNNDGLPESICKICSNLLKEIKIFIDQSRDNYSILKLALNETNDNRSYDVICEPKYERTENSLIKSEQNQNKDNGSEQESETKLKSDENEIFQCAQCDMTFLVKKLLILHIEEKHNTNLISNNNCKKCNMVFDSKVLLLKHRRLHRRKKNKKVKNIKYNCTECDRILTSQSALDNHMKTHTGDRPYKCSYCDKNFAFSGSLTVHTRIHTGETPYQCAICNKGYRSSSSLKKHKEKKHFDLKSFNDKGWKDLEKVQCKFCNKMLHKHGYGTHMRIHKNEKQERICPFCSKHFKKSSHLERHVRIHTGERPFTCILCKKSFTQEGDLKRHWASHSGQKEYQCQHCGRLYSTKSALDTHITTSHAAAKKSNCDICKAACKCDKLSTEHRSFLCTICGKSFTAGNSLKVHIRLHTGDCPFVCTYCGKGYISTSNLKRHVMRNHTLERPHVCMICHKGFHDSTNLKRHINRVHSVLEIKDRNEDTPTVNEAKIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00792646;
- 90% Identity
- iTF_00792646;
- 80% Identity
- iTF_00792646;