Basic Information

Gene Symbol
nfxl1
Assembly
GCA_947507615.1
Location
OX382347.1:11511869-11514337[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 2.8e+04 -7.8 5.6 15 19 135 139 134 139 0.81
2 19 0.01 1.5e+02 3.2 0.3 4 10 170 176 169 177 0.97
3 19 3.1e-07 0.0043 17.7 15.9 3 19 187 203 186 203 0.95
4 19 0.15 2.1e+03 -0.5 3.5 1 8 228 234 228 235 0.89
5 19 7.5e-09 0.00011 22.8 12.2 3 19 240 256 238 256 0.92
6 19 1.9 2.7e+04 -4.0 1.6 6 10 281 285 280 285 0.89
7 19 3.6e-10 5.1e-06 27.0 13.6 1 19 291 309 291 309 0.99
8 19 1.5e-05 0.21 12.3 18.8 3 19 346 362 338 362 0.86
9 19 2 2.8e+04 -5.3 2.2 5 10 385 390 385 390 0.88
10 19 0.00026 3.6 8.3 16.6 2 18 397 413 396 414 0.91
11 19 2.3e-08 0.00033 21.2 16.9 1 19 423 441 423 441 0.99
12 19 0.00084 12 6.7 4.7 9 19 489 499 487 499 0.89
13 19 8.6e-05 1.2 9.8 6.7 1 12 509 519 509 519 0.96
14 19 0.35 4.9e+03 -1.7 3.3 14 18 548 552 548 553 0.85
15 19 0.29 4e+03 -1.4 0.3 8 12 569 573 568 579 0.81
16 19 9.3e-06 0.13 12.9 6.5 1 11 589 599 589 600 0.97
17 19 1.6 2.2e+04 -3.8 1.7 15 18 614 617 614 618 0.87
18 19 9.5e-05 1.3 9.7 12.6 1 18 629 646 629 647 0.89
19 19 4.4e-06 0.061 14.0 11.8 1 16 688 702 688 707 0.90

Sequence Information

Coding Sequence
ATGGCACGTCGATACCGGGATGCTGCTGCAAAATTGCAGCAAAACGTTCAAAAGCATTTGAAGGAAATGAAAGATCACCTATCGTCTTCGGAAGATGAGGAACCTTACGAGGCGAGCGTTCTCGAAGGAGTGTTCCAGAGTTACTGGCGAGGAGGCGGCGATACTCACATGCTTAACAGAACCAAGAATCTGCTAGAAGAAGCGCTTAGCGGCCGACCAGTGACGTGTCTTATCTGCATTGCTTCTATCAAACGAAACCATGCTATTTGGACTTGCGACCATTGCTACTCGTATTTCCACTTGTCCTGCATACAAAAATGGGCAAACGACAGCATCAGCTTACGCAGCGAAGAAAACCAAGGGCCTGTCAGTGTTTACGTGCCGAAAAAAATCGAATGGTGCTGTCCAAAGTGTAGACAATCTTACAGTAAGGAAGAGATACCGCGTAGGTACCGGTGTTTCTGTGGTAAGACGGAAGACCCGCCCTTACACCCTTGGCAGATACCTCATACTTGTGGAGAGGTCTGTGGGAAGAGGTTATCTTTAGGGGACAACTGTAAGCATAAATGTCTACTTCTCTGCCATCCTGGTCCATGCCCGCCGTGTCCACAAACAGTTAACGGCATATGCTACTGTCAAAAAGAGCAGAAAAAGGTGAGATGTAGTTCGGCAAAGTGGTCATGTGGTCATCAGTGTAAGAAAACATTATTATGTCGGACACATAAGTGTGAAGACATCTGCCATGATGGAGACTGCCCTCCTTGCAGCTACACTAGCATACAAGCTTGTCAGTGTGGCCAGGAGAAGGCTAAGAGACCTTGTAATGATCCTAGATGGCAGTGCACTAAAGTATGTGGCAAACCATTTGAGTGTGGATATCATAAGTGTGAGAAAGTTTGCCATTCTGGTAACTGTGGCTCTTGCCCCAACACTGGCTTGTGTTCTTGCCCTTGTGGTGCCGATCAACGCTACGTACAATGCCCTGATGTTATGGAAACATGCTTAGGAACTTGTGGAAAGAAACATGAAGACTGTGAACATTCTTGCCCCGAGAAATGCCACAAAGGCCCGTGCGCTCCCTGCCAAGTTCTAATACAAAAGAAATGCCTTTGTTCCACACACACCAGGTCCCTCCCTTGTAGCAAAGAGTTCAAGTGCGAGACTAAATGCCGTGGAACCAGACCTTGCAGGAAGCATCCTTGTGCTAGAAAATGCTGCAACGGCAACTGTCCTCCGTGTGAGAAAACTTGTGACAAGCCTCTACAGTGTGGTCGACATAAATGCACAACAATTTGCCATCACGGCCCTTGCTACCCTTGTCCGTTAGAGTCCAAAGTTACTTGCAAATGTAAAGAGACGTACATAACTGTCCCGTGCGGTAGAGAAAGACTAGTCAAACCACCTAAATGCAATCTTCCCTGTAAAGTAAGATATAAGTGTGGTCACAGTGAAGAAAACAAACATTCCTGTCACTTCGGTGACTGTACTCCATGCAAAGCAATATGTCAGAAAACCTACAAGAAATGCGGACACAACTGTGAAGCAGTTTGCCACGAATATGTTGCCGTAGTCTTCAAACAGGTGGAGAAACCAGCTACTCCATGGGAGGTACAGGCTCCGAAGACTAAAATCATGGCTTTAGAATGTCCTCCGTGCAATGTACCTATCTCAATCACTTGCTTTGGTGAACATGAGACAGAAGATCGACCCTGTCACTCGGCAGCTAGGAGACCATGTGGCAGGGACTGTGGTAGGCCACTGGCTTGTGGTAACCATAAATGCACACAAATGTGTCACTTACTTGCATCGGATGCTCAATATCCAAATGTGCCTTATATTTGTAAACCGTGTAACAGAGGTTGTGAGAAGCCCCGTCCACCGAAATGTTCACACAAGTGTTCTATAGAAGCATGCCACCCAGGGATGTGCCCACCCTGTGAAGCCTACGAAAGGCTACCCTGTCTCTGTGGTACTACAGAACTCTACTTACGTTGTCGTGAACTCAGCACGGCAACTGAAGAAATGATGTCTTGCAAGCAACAGTGCCCGAAGAATCTAGAATGTGGCCATCGCTGCAAAAACACATGCCATTCAGGGAAATGCAGCAAACAAATATGTACCAAGAAAACTAAAATACACTGCCCTTGTGGTAACTTGAAAAAAGATGCAGCTTGCAATGCAGTCAGAAAGGGCGACGCAAAAATTATTTGCGATGAAACATGCCAAGCTAAACAACTGGCTGCAAAATTAGAAAACGAAAAAGAACAGCAAAGACTAAAATTGCTTGAAGAAGAAAAAAATAAAAAAGAACTGGCTGAATATGAGTGGAAACTCAGCGGCAAAAAGAAAAAGTATAAGGAAAAGAAGGTTGTTATCGCCAAAGACGAAAGAAATTGGCTGCAGAAGTTTTGGATACCTATACTATCAATAATTGTTGGTATTAGTGCTGGTTTATATTATATACTTTAA
Protein Sequence
MARRYRDAAAKLQQNVQKHLKEMKDHLSSSEDEEPYEASVLEGVFQSYWRGGGDTHMLNRTKNLLEEALSGRPVTCLICIASIKRNHAIWTCDHCYSYFHLSCIQKWANDSISLRSEENQGPVSVYVPKKIEWCCPKCRQSYSKEEIPRRYRCFCGKTEDPPLHPWQIPHTCGEVCGKRLSLGDNCKHKCLLLCHPGPCPPCPQTVNGICYCQKEQKKVRCSSAKWSCGHQCKKTLLCRTHKCEDICHDGDCPPCSYTSIQACQCGQEKAKRPCNDPRWQCTKVCGKPFECGYHKCEKVCHSGNCGSCPNTGLCSCPCGADQRYVQCPDVMETCLGTCGKKHEDCEHSCPEKCHKGPCAPCQVLIQKKCLCSTHTRSLPCSKEFKCETKCRGTRPCRKHPCARKCCNGNCPPCEKTCDKPLQCGRHKCTTICHHGPCYPCPLESKVTCKCKETYITVPCGRERLVKPPKCNLPCKVRYKCGHSEENKHSCHFGDCTPCKAICQKTYKKCGHNCEAVCHEYVAVVFKQVEKPATPWEVQAPKTKIMALECPPCNVPISITCFGEHETEDRPCHSAARRPCGRDCGRPLACGNHKCTQMCHLLASDAQYPNVPYICKPCNRGCEKPRPPKCSHKCSIEACHPGMCPPCEAYERLPCLCGTTELYLRCRELSTATEEMMSCKQQCPKNLECGHRCKNTCHSGKCSKQICTKKTKIHCPCGNLKKDAACNAVRKGDAKIICDETCQAKQLAAKLENEKEQQRLKLLEEEKNKKELAEYEWKLSGKKKKYKEKKVVIAKDERNWLQKFWIPILSIIVGISAGLYYIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01172943;
90% Identity
iTF_00790876;
80% Identity
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