Haes016542.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947507615.1
- Location
- OX382331.1:16963335-16976420[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-77 1.1e-72 245.5 22.0 1 297 16 297 16 299 0.90 2 2 0.71 2e+04 -4.9 11.6 1 50 296 347 296 371 0.47
Sequence Information
- Coding Sequence
- ATGCTAGAATCAGGTCGAATCAGGCCGAGCCGGTGGCCGGGTCAGGCGGAACAGCGTCTGGCAGCGCGGCGTGCGGCGCGGGCGGAGGCGCGGGAGATCCGCATGCGGGAGCTCGAGCGGCAACAACGAGAGCAGGAGGACCATGCGGATAAGGCGTACGATATGTATGCAGAGACGGTGGGCAGACGCGGAGGCCCGCGGCTGGCGGCTCTCAGCCCCGCCTCGAGTCTGGTGCACTCGCCGCGACGGAGCTCTGAGGACTCCGCCGATGACACCTTCAGTATTAAAGACTTACGGCACGAGTTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTGCACTACCAGCTCGAACTGCTCAAGGACCGTCTGCTGGAGCTGCAGGAGGAACACGCGCAGTTGCAGCGTGAGCACCGCGAGAAGTGTTCGTCGCACGAGCGGTTGCGTCGCGAGCACGTGTCGACGGAGCGCGAGCTGGTGTGCGCCCGGGACGCCGTGCGGGCGCGGGACGCGGCCGCCGCCGCCGCCGGGTTCGTGTTCGCGGAGGCGGCGGGGGCGGAGGGCGAGGGCTTCGGCTCCGTGCCGCCGCTCGCGCTCATCTCGCACGCCTGCGACCAGGCGCTGCACGACGCAGGCGAGGGCACGCTCGACGTGCGGTTGCAGAAGTTAGTGAGCAGCAAGGCGGCGCTAGAGTCGGAGGTGCGCAAGTTGAAGTTAGCGCTGAACGAGGAGCGTGCCGCACGACAGAACGGAGTTGCCTCCGCGCACGATCTCGACTATGACTCCGAATTGGAGCAGTTGCGCAAGAGCCTGACGGAAGCCAAAGCCCGAGCGGCGCGCGCCGAGGCGGAGGCGGCGCTGGCCGGCGCCGGGGCAGCCAGGCTCGAGGCACAACTGGCTCGACTGAGGGCCAGGCATGATGCCAGGGACGACGAGGAGGAGCAGCTCAAGCAGGACAAGCGACGTCTGCAGCGGGAGGCGCGGGAAGCTCTAAATCGAGTAGAAGAATTGGAGACAGAAAACAGCCACCTGACCAAGAGACTTGACAAGCTGAAGAATGCGAAATCAGCGCTTTTGAAAGAACTGTGA
- Protein Sequence
- MLESGRIRPSRWPGQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGPRLAALSPASSLVHSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDRLLELQEEHAQLQREHREKCSSHERLRREHVSTERELVCARDAVRARDAAAAAAGFVFAEAAGAEGEGFGSVPPLALISHACDQALHDAGEGTLDVRLQKLVSSKAALESEVRKLKLALNEERAARQNGVASAHDLDYDSELEQLRKSLTEAKARAARAEAEAALAGAGAARLEAQLARLRARHDARDDEEEQLKQDKRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00055438;
- 90% Identity
- -
- 80% Identity
- -