Hchr006113.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947063395.1
- Location
- OX346713.1:15895882-15914547[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-76 4.1e-72 243.7 19.0 1 296 118 403 118 407 0.87 2 2 0.15 4.4e+03 -2.7 6.6 123 167 428 473 413 481 0.63
Sequence Information
- Coding Sequence
- ATGGGGCATCGATCAGAGGTGGCTACGCCTGATAACAGCGACGAGGAGAGCGGGGAAGCCTTCACTGACGGAGACTTCGGTGAATCCGACGATGAAACTATTTTAGAGAGGAATGATAACAAATCCAATATTCCCGTCAACGAGACGGTAAATGAAGAAATACAGAAGAACGTGAGCAACGGAAACTGTTCACATAATGGACACGACGAGTTCGATCAGCCCAAATTAAATGGACATAAGAACAGTGATCAAAGTGATGTGGATATTTATGCAACGTCGGAAGTGAGGCGGGATTCCCACGGAGAACAGAACCCTTCGATTGTTGGAATTCTTGGAGATCAGCAGAACCATGCGGAGCAGCGTCTGGCGGCACGGCGCGCTGCTCGTGCGGAGGCCCGAGAGATCCGCATGCGGGAGCTCGAGCGGCAGCAACGAGAGCAAGAGGACCATGCGGACAAGGCGTACGATATGTATGCAGAGACAGTGGGTCGTCGTGGAGGCACGCGGCTGGCGGCGCTCAGCCCCGCCACCAGTCTGGTGCACTCGCCGCGGCGGAGCTCCGAGGACTCCGCTGATGACACGTTCAGTATTAAAGACTTACGGCACGAGTTGAAGGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATATTGAACGCGCAGCTCGACAACGACAAGGCGGCGCTGCACTACCAGCTCGAACTGCTCAAGGATCAGCTGCTCGAGCTGCAGGAGGAACACGCTCAGCTACAGCGCGAGCACCGCGAGAAGTGTTCGTGTTACGAGCGGTTGCGGCGCGAGCACGTGTCTACAGAGCGCGAGCTTGGCTGCGCGCGGGACGCGGTGCGCGCGCGCGACGCGGCCGCCGCGAGCGCCGGGTTCGTGTTCGCGGAGGCGGCGAGCGCGGGGGAGGCCGGGCAGGTGGGCGGAGGGTTCGGCTCCGTGCCGCCGCTCGCGCTCATATCGCACGCCTGTGACAAGGCGCTGCAGGACGCCGGCGAGGGCACTCTGGACGTGCGGTTGCAGAAATTAGTGAGTCAGAAGACAGCGCTGGAATCTGAGGTTCGCAAGTTGAAGCTGACGTTGAATGAAGAGCGCGCCGCGAGACAGAACGGTGTCGCCTCCGCGCATGATCTCGACTACGACTCCGAATTGGAGCAGGTGCGCCGGAGCCTGGCGGAGGCGAAGGGCCGCGCGGCGCGCGCCGAGAGCGAGGCGGCGCTGCAGgcggccggcgcggcgcggctcGAGGGCCAGCTGGCGCGCCTGCGGGCCGCGCACGACCTGCGCGACGAACACGAGGAGCTGCTCAAGCAGGACAAGCGCCGCCTGCAGCGAGAGGCGCGAGAAGCTCTCAACCGCGTAGAGGAATTGGAGACAGAAAACAGCCATCTGACGAAAAGGCTCGACAAACTGAAGAACGCTAAATCTGCGCTACTGAAGGAGCTGTGA
- Protein Sequence
- MGHRSEVATPDNSDEESGEAFTDGDFGESDDETILERNDNKSNIPVNETVNEEIQKNVSNGNCSHNGHDEFDQPKLNGHKNSDQSDVDIYATSEVRRDSHGEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPATSLVHSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDQLLELQEEHAQLQREHREKCSCYERLRREHVSTERELGCARDAVRARDAAAASAGFVFAEAASAGEAGQVGGGFGSVPPLALISHACDKALQDAGEGTLDVRLQKLVSQKTALESEVRKLKLTLNEERAARQNGVASAHDLDYDSELEQVRRSLAEAKGRAARAESEAALQAAGAARLEGQLARLRAAHDLRDEHEELLKQDKRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00250477;
- 90% Identity
- -
- 80% Identity
- -