Hchr019223.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- sip1
- Assembly
- GCA_947063395.1
- Location
- OX346727.1:4954503-4971289[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-52 1.7e-48 166.3 0.3 3 275 367 623 365 623 0.95 2 2 0.27 3.9e+03 -2.2 0.0 71 114 633 678 627 682 0.73
Sequence Information
- Coding Sequence
- ATGTCGGACGACGAGGTTATACGGTTCGAAATCACGGATTACGATTTGGACAatgaatttaatttcaatagGGGTAGAAAAGCCAAGAAAGAACACCAGATTTATGGCGTGTGGGCGAAGGACAGTGATGAAGAGGACAATGAAGATAATATCAGACAACGCACAAGGAAACCTAAGGATTTCTCAGCACCCATTGGTTTTGTGGCCGGTGGGGTGCAACAGGCTGGCAAGAAAAAGGAAGAAAAGaaagAGTTAGAATCATCAGAGCCCTCGACATCCCGCCCCCGGTTTGCCCCCGACAGCTCAGATGAAGAGGAACCTGACCAGCCAGCTGAGACAGACACGGCTGGCATCAGGAGGAAGGGTCAGGGCATGAGGTCCGTCAACCTTGGAGGAAACCTGGGCAATTGGGAGAAACACACCAAGGGTATCGGAGCCAAATTGTTGTTACAGATGGGTTACCAACCAGGCAAAGGTCTGGGCAAGGAACTCCAAGGTATATCTGCCCCAGTGGAAGCCACCGTGCGGAAAGGAAGGGGGGCTATTGGTGCTTATGGTCCTGAAAAAGCAGCTCAAAAAGCGAAAAGAGAAGAAAAGAAACGCCTGAAAGAGAAGGAAGAGGAAGAGAAAGGCACAGAGAAAACATACAACTGGAAGAAATCTCACAAAGGACGATATTTCTATAAAGATGCAGACGATGTCATACAAGAGGGGAAGCCTACCATGCATACTGTAGCTAGCAACGAATTATCCCGCGTGCCAGTAATAGATCTCACGGGTCGTGAGAAGCGCGTGTTGAGCGGCTACCACGCGCTGAGAGCGGCCGCGCCACGGTTCGAACACGAGCCGCGACGTAAGTGTGAACACTTCGCCGTGCCCGAACTCTCGCACAACTTGAATCTGATGCTCGAGTGCTGTGAACAGGACATAATCCAGAACGCACGCGAACTCCAAGCGGCCGAAGATGAAATAGTAGTCCTAGAAAGAGACCTAGAGGAGTGCGACCTCCAACTGGAAGAACACGACCAGGTCATTGACAAAATGCAGACTCTATTAGGCAAGATTGAGGCGCTGAACCGACCTGACTTGTCTCTGGAATCTGCTTATGAAGTGCTTGCTGAATTGaagGAAGGTCACCCATTAGAATATGAGATGTTCGGGCTAGGCACGATAGCTGGCAACATTATCAGTCCGTTGATCAGTTCATTGCTGGCTCCGTGGGAACCTTTGGAGTCGCCTGACGAGCCTATACCGATATTCCTCAAATGGAAGGATTTGTTGACTGAAGAGGCATATAATAGCTTGCTGTGGCAACACTGTGTACCTCATATCACAGCTGCGGCTGAAACATGGAACCCTCGCGAGCCGGAAGCGATGCTCCGCGCAGTGTCCGCATGGGAAGCCCTGGGCCCGAGCGGCAGCTACGCAGCGCGGCAGTGTGCCTCTCGCTGTGTGGCCGCCAGGCTGCTGGCCGCGGCGCGCGCCTGGGACCCCACCACGGACCCGCAGCCCGTGCACTGCTGGCTGCTGCCCTGGCATCAACTGGCTGGCGAGGCGCTGTCGACGAGCGTGTACCCGTTGATCCGCAGCCGGCTGGCGCGCGCGCTGGCGGCGTGGCACCCGGCGGACGGGTCGGCGCGCGGCGTGCTGGCGGCCTGGCGGGCGGCCTGGGGGCCGGCGCTGGCGCCGCTGCTGCACCACCACGTCGTGCCCAAGCTGGAGCATTGTCTACATCACGCGCCTCTGGACCTCGTGGGAGGAGAGAACGCTGCCTGGCTATGGTGTGTGGATTGGTTAGAGCTCCTGGGCGCTCCGACAGTGGCCGCTATAGCGAGCAGAGCGCTGCTGCCGCGCTGGCTCGCGGCCCTGGCAGCTTGGCTCAACACCAACCCCACGCATGCCACTGTGCTCACTTCTTACACTGACTTTAAGAAAATGTTCCCGGAAGAAGTGTTAAAAGAGCCGTCGGTGCGCGAATCGTTCAGGAAGGCCCTGGACATGATGAACCGCAGCACCGATATAGACGCCGTGGAGcctccgccgccgccgcggTTCACTGTCTCCGAAACTAAGGAAACTTCCAGGATCGCTGATGTTTTACTCTCAGCTACCCAACAGAAGAGTTTCTCCGAACTTCTCGAAACAAGATGCATGGAGAAAGGCATCACGTATGTACCGATGGTCGGCAAATCTCGAGAGGGAAGACCTATATACAAGATCGGGGCCATGcagtgttatgttataagaaaTGTTATTATGTACTCTGAAGATGGCGGTAGAAACTTCGGCCCTATTGCTATGGACCGGCTTTTAAATTTAGTTGAAGATTAA
- Protein Sequence
- MSDDEVIRFEITDYDLDNEFNFNRGRKAKKEHQIYGVWAKDSDEEDNEDNIRQRTRKPKDFSAPIGFVAGGVQQAGKKKEEKKELESSEPSTSRPRFAPDSSDEEEPDQPAETDTAGIRRKGQGMRSVNLGGNLGNWEKHTKGIGAKLLLQMGYQPGKGLGKELQGISAPVEATVRKGRGAIGAYGPEKAAQKAKREEKKRLKEKEEEEKGTEKTYNWKKSHKGRYFYKDADDVIQEGKPTMHTVASNELSRVPVIDLTGREKRVLSGYHALRAAAPRFEHEPRRKCEHFAVPELSHNLNLMLECCEQDIIQNARELQAAEDEIVVLERDLEECDLQLEEHDQVIDKMQTLLGKIEALNRPDLSLESAYEVLAELKEGHPLEYEMFGLGTIAGNIISPLISSLLAPWEPLESPDEPIPIFLKWKDLLTEEAYNSLLWQHCVPHITAAAETWNPREPEAMLRAVSAWEALGPSGSYAARQCASRCVAARLLAAARAWDPTTDPQPVHCWLLPWHQLAGEALSTSVYPLIRSRLARALAAWHPADGSARGVLAAWRAAWGPALAPLLHHHVVPKLEHCLHHAPLDLVGGENAAWLWCVDWLELLGAPTVAAIASRALLPRWLAALAAWLNTNPTHATVLTSYTDFKKMFPEEVLKEPSVRESFRKALDMMNRSTDIDAVEPPPPPRFTVSETKETSRIADVLLSATQQKSFSELLETRCMEKGITYVPMVGKSREGRPIYKIGAMQCYVIRNVIMYSEDGGRNFGPIAMDRLLNLVED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00791212;
- 90% Identity
- -
- 80% Identity
- -