Hfuc025815.1
Basic Information
- Insect
- Hemaris fuciformis
- Gene Symbol
- -
- Assembly
- GCA_907164795.1
- Location
- OU015444.1:1649449-1653617[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00035 0.029 15.4 1.5 1 23 292 315 292 315 0.96 2 11 0.014 1.2 10.3 2.4 1 19 331 349 331 353 0.91 3 11 3.1e-05 0.0026 18.7 3.8 2 23 359 380 358 380 0.97 4 11 7.3e-06 0.00061 20.6 0.5 1 23 384 407 384 407 0.97 5 11 0.003 0.25 12.4 2.5 1 23 410 432 410 432 0.98 6 11 0.00044 0.037 15.0 0.2 2 23 512 533 511 533 0.95 7 11 0.098 8.2 7.7 0.2 2 23 553 575 552 575 0.96 8 11 9e-07 7.5e-05 23.5 4.1 1 23 581 603 581 603 0.98 9 11 0.00049 0.041 14.9 2.5 1 23 608 630 608 630 0.98 10 11 0.015 1.2 10.2 5.2 2 21 637 656 636 659 0.94 11 11 0.0048 0.4 11.8 1.6 3 19 699 715 698 717 0.97
Sequence Information
- Coding Sequence
- ATGGATCGGGAGTACGAAAATCCTGACCACGAGAACCATTATCCAGTGTTACTGTTGCCTAAAAGATGCACACCCTTGGAAACAAACTGTGAGGTGACTGATAATGTGTACATAGACATAAATATTACATCGCCGGACACTGAAGGTAATGAAACTTGCATATACTCAGGCTTTTGCAATGTCAAACTTGTGGACAGTTACAATGTTAACTTGGAAACAGATGATGATATTGAAGAAGATTCCCCGGCTAATGTTAAGGAGATCCAGACATATCCACAGTACAATCAGTCACAAGTTTGGATAGATCCAGTGAGAAGTCCATATGTATACAACCACTATGATGGCAAAATACAGGAATGCTATTCCATATGTCAAGAACATACTGGACATATAACTGTAGAACAACACAATACATATATTACTCAAAATGTTTACAACTGCAATGAGAATGTTCAGGTCTCTCCGGATTTTGAGCATAAAAAATTCAGAAAGCATGACAATCCAGAGAGACAGAGCTCTGATCCAAATTTCAATTTATATGAAGAAGACGAATTTGAATGTGGAGTGTTTCTGTCCCAGTTGTCCGAAGAGATTATAAATGAGAAGGAGAACCGTGCAAGGGAGGAAAGAAAATTCATAGGTCTTCAAAGTGAAAATAATGCTTTAAAACAGTTAATGTCAAGTGACATTCAGTCGGTAACTAAACAACGTAAAACAATATTGTTCCTAGGTCATGATTCTCAATCAGGCCAGACTATACAAAACATATCTATGAATGACCCGTCACTGGAATGTGTTGGGAACGGAGAAATTGACCATGAAGTCATAATTGATGACTCATCAACCTCTTCAACCAATCCACACCAGAAGAAGTACCAATGTGACAAATGCAAGCAAATATTTGATCAAATATCTACATTCAAACAACACATGGTCAGCACACACAAACATGTATTTGAACTGCAATCCCGGCCATTGGGTGACGTCAAGTACATGTGTACTGAATGTGGGAAAAACCTCAAGAACCGAGAGAAATTTGAGCAGCACTGCATGGGCCATGGTGACCCAGAACTAGAATGTAACAAGTGCCACAAAGTGTTCGCTTCAAAGTTCACCTTGCGCACGCACCGTAAGATCCATAATCGAAAATACCCTTGTAGTTATTGCACAAGGACTTACGCCACCTCAGAAGAGCTGAAGGTTCACATGACAAAAATACATTTTGCTTTCATGTGCAACAATTGTCCGTATACAACTTGCAAATATTCCGATTTGGTGAACCATTGGTCCACACACAAAGATTTTAAAATTAAGGAGTCTAGTGACACTGAATTTGCTGAGTCATTGATGGAGGATATCAGTGAGCCTGATATCATAACTTCTTCGCCCGTGGAACCGCCCCCAGTCCCCGAGAATCAGATGTCGAAGGAGGAACAGGCTGAAGAAGCGGACTCTGTGATTGCAAAGGTTATGGCGAACAAGATGTTTTTGCTGCACGCCAAGAAAGCGCGAAGACATCGCAAATACAATAAGGTTTGTGAAGTGTGCCTGAAAACCTTCGACAGGATCGGAGATTTGAAAAGACATTTAATAGAACATGTTATAAGAAGTACACTAGCAAAAACACCTGTAGGTAAAGACGGCACACTGAGCATTCAATGCGAGGTGTGTCAGACAGAAGTATTCACAAGAATCGACAGATACAAAGCGCACCTTCGGGAACATGCTAAACTCACCTTATACAAATGCACCTTCTGCGACAAATCGTTCAGCGATTCAAGCAATTTCTCCAAACACAAGAAAATCCACGGCACAACGTACTTCCAATGTGATCTATGCCAAAGGAAATTCAATTCTAAAAAGATGATCACACAGCACATGGAGTATCATAACAAGAATTCGCCGGTAAAGTGTAAATATTGCAGTAAGGTATTCCATTTCGAGTCAATGCTTAACAAACATGTGAAGTGCACACACGCTAAGGAGATATACACTAAGTTTAAGTGCAGATTTTGCCGCAACTACTTCAAAACTTTGAAGGAGAAATGGGATCACGAGTGGACCATACATAATGTGAGGAAGATGGTCGTTGATTGCTTAATCTGTGGCATGAAGTTCCGGAAGTATTCGGAGTTGAAGCGACATTGCTTTGATGAGCACGATATGGAAATACCACCGGCAAAAAAGTTGATAAAACGAATCCAAGAGTGA
- Protein Sequence
- MDREYENPDHENHYPVLLLPKRCTPLETNCEVTDNVYIDINITSPDTEGNETCIYSGFCNVKLVDSYNVNLETDDDIEEDSPANVKEIQTYPQYNQSQVWIDPVRSPYVYNHYDGKIQECYSICQEHTGHITVEQHNTYITQNVYNCNENVQVSPDFEHKKFRKHDNPERQSSDPNFNLYEEDEFECGVFLSQLSEEIINEKENRAREERKFIGLQSENNALKQLMSSDIQSVTKQRKTILFLGHDSQSGQTIQNISMNDPSLECVGNGEIDHEVIIDDSSTSSTNPHQKKYQCDKCKQIFDQISTFKQHMVSTHKHVFELQSRPLGDVKYMCTECGKNLKNREKFEQHCMGHGDPELECNKCHKVFASKFTLRTHRKIHNRKYPCSYCTRTYATSEELKVHMTKIHFAFMCNNCPYTTCKYSDLVNHWSTHKDFKIKESSDTEFAESLMEDISEPDIITSSPVEPPPVPENQMSKEEQAEEADSVIAKVMANKMFLLHAKKARRHRKYNKVCEVCLKTFDRIGDLKRHLIEHVIRSTLAKTPVGKDGTLSIQCEVCQTEVFTRIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTYFQCDLCQRKFNSKKMITQHMEYHNKNSPVKCKYCSKVFHFESMLNKHVKCTHAKEIYTKFKCRFCRNYFKTLKEKWDHEWTIHNVRKMVVDCLICGMKFRKYSELKRHCFDEHDMEIPPAKKLIKRIQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01010670;
- 90% Identity
- iTF_00290957; iTF_00428391; iTF_00819431; iTF_01430159; iTF_00820341; iTF_00429275;
- 80% Identity
- -