Hhel004829.2
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- -
- Assembly
- GCA_963853865.1
- Location
- OY971416.1:22485299-22487182[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-07 0.00013 22.5 0.0 2 38 16 53 15 57 0.95 2 2 2.3 1.3e+03 0.0 0.0 21 30 330 339 323 351 0.75
Sequence Information
- Coding Sequence
- atgccaCGAAATTATAAAAGAACGACTAATCGACAATCTTGGAGTGAAGAAGGTATGAAAAAAGCTATTTTAGAAGTAATAGAGGGAAAATTTGGTTATCGCATCGCTTCCCGAAATCATTCTGTACCACAATCAACACTTGAAGACAGACACATTAAAGACCTTGAAGCTCAGTTATTTGGACTTACCTATAGAGATATTCGTCAACTCGCATTTCAAATGGCTGAAAAAAATGgcttatatcataattttaacAAAGATACCGGATTAGCGGGAATGGATTGGCTTTACGGATTTCTACGTCGTCATCCTGATTTGTCGTTACGCCTTCCTGAGTGTACTTCAGTTGCACGTGCCATGGGATTCAACAGGATAAATGTCTCTAAGTTTTTCTCCCTACTAACTGAATTACAAgagaaatacaattttagacCAACCAATATCTATAATGTCGATGAGACAGGCATCACGACCGTCCCTAAAAAAAGATCGAAAGTAATTGCTGTAAAAGGTAAAAAGCAAGTAGGCCTCATCTCTTCAGCTGAAAGAGGCCAATTGATGACCGCAGTTTTATGCATGTCTGCTGCTGGTGTCTACGTTCCACCGCTATTAATTTTTCCGAGAGTCCGTATGAAGGCTGAATTGTTAGATGGTGCACCGCTTGGAACTATTGCTATATGTCATCCTAGTGGATGGATACAAAGCGAGATTTTTGTTCACTGGCTTGGTCACTTCATTGAAAGCGTCAAACCCACTAAGAATAATCCTGTATTGCTTTTGCTTGATGGACATGCCACGCATACCAAAAATCTTGCATTGATAGAAAAAGCACTAGCAAATGGAGTCATCATAGTTAGCTTTCCACCACACTGCACTCATCGTCTGCAACCCCTCGACGTTAGCTTCATGGGCCCACTAAGTACCTATTACAGCCAAGAAGTGATGACATGGCTGCGTAATCATCCAGGTCGTGTTGTAACTCAATTTCAAATTGCACAGCTTTTTGGGATTTCATATGCGAAAGCGGCGACTCTTCAAAATGCAATGAGTGGTTTTTCTAAAACAGGTATTTATCCACTGACTCCGAATATCTTCTCTGGTCATGATTTTATTTCTGCTGCTACAACAGACATCGATGTCAGATGTACTGACCCTGTGACGAACTCTTCTGAACCAGTTATAGTTGAAACTCAAATTGAAAACACTGTTTTTAACACCAACTTAGCTAAATGTAACACTGTGCAAGAACACCAGCGTCAGGTTTCAGAAGCTTTAGTATTAAATCCACAATCAATCCCATCGCAGCAGCCACCGGGTAGCCCACAACCAAGTACATCCCAGGAATCGCAGTCTTTAGCTTTTTCGCCAGCTGATATTTTACCTAAGCCTCATGTCGCAAGAAAAATATCTACAAAAGCTACAAATGCTCGTAGAGGTAAAACAGCTATTATTACTTCGTCACCTTATAAATTAGAACTAGAAgaaaatgccaaaaaaaaatataagaaaattgtTCCTAAACTTAGAAATGACTTAGCGAATCCCAAAATctccaaaaaaaagttttcagatGATATTTGCATTTATTGCACAGAAATATATGGCAACACCAGATCCAGTGACGATTGGGTGCAATGCCTGACATGCAAAAAATGGGCTCGTGAAGGCTGTACAGGCTGGGAACCCGAGGAGCTGGACCGCATATTTGTATCCTGTTTCTTGATACGTTGGCTTATAATTGATAGAAGTTCATCAAATGAGTTCACAGACATTCTGTAG
- Protein Sequence
- MPRNYKRTTNRQSWSEEGMKKAILEVIEGKFGYRIASRNHSVPQSTLEDRHIKDLEAQLFGLTYRDIRQLAFQMAEKNGLYHNFNKDTGLAGMDWLYGFLRRHPDLSLRLPECTSVARAMGFNRINVSKFFSLLTELQEKYNFRPTNIYNVDETGITTVPKKRSKVIAVKGKKQVGLISSAERGQLMTAVLCMSAAGVYVPPLLIFPRVRMKAELLDGAPLGTIAICHPSGWIQSEIFVHWLGHFIESVKPTKNNPVLLLLDGHATHTKNLALIEKALANGVIIVSFPPHCTHRLQPLDVSFMGPLSTYYSQEVMTWLRNHPGRVVTQFQIAQLFGISYAKAATLQNAMSGFSKTGIYPLTPNIFSGHDFISAATTDIDVRCTDPVTNSSEPVIVETQIENTVFNTNLAKCNTVQEHQRQVSEALVLNPQSIPSQQPPGSPQPSTSQESQSLAFSPADILPKPHVARKISTKATNARRGKTAIITSSPYKLELEENAKKKYKKIVPKLRNDLANPKISKKKFSDDICIYCTEIYGNTRSSDDWVQCLTCKKWAREGCTGWEPEELDRIFVSCFLIRWLIIDRSSSNEFTDIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00986001; iTF_01178498; iTF_01178501; iTF_01178502; iTF_00786731;
- 90% Identity
- iTF_00986001;
- 80% Identity
- -