Hhel015200.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- -
- Assembly
- GCA_963853865.1
- Location
- OY971424.1:6383873-6385700[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7e-07 0.00055 20.5 0.0 2 37 16 51 15 57 0.89 2 2 1.6 9.2e+02 0.5 0.0 19 30 337 348 332 360 0.76
Sequence Information
- Coding Sequence
- atgccaCGAAATTATAAAAGAACGACTAATCGAAAATCTTGGAGTGAAGAAGGTATGAAAAAAGCTATTTTAGAAGTAATAGAGGGAAAATTTGGTTATCGCATCGCTTCCCGAAATCATTCTGTACCACAATCAACACTTGAAGACAGAttGACCAAGAAAATTCAATTTATCAGCACATTAAAGACCTTGAAGCTCAGTTATTTGGACTTACCTATAGAGATGTTCGTCAACTCGCATTTCAAATGGCTGAAAAAAAATGGCTTAAATCATAATTTTAACAAAGATACCGGATTAGCGGGAATGGATTGGCTTTACGGATTTCTACGTCGTCATCCTGATTTGTCATTACGCCTTCCTGAGCCTACTTCAGTTGCACGTGCGATGGGATTCAACAGGATAAATGTCTCTAAGTTTTTCTCCCTACTAACTGAATTGCAAgagaaatacaattttagacCAACCAATATCTATAATGTCGATGAGACAGGCATCACGACCGTCCCTAAAAAAAGATCGAAATTAACTGCTGTAAAAGGTAAAAAGCAAGTAGGCCTCATCTCTTCAGCTGAAAGAAGCCAATTGATGACCGCAGTTTTATGCATGTCTGCTGCTGGTGTCTACGTTCCACCGCTATTAATTTTTCCGAGAGTCCGTATGAAGGCTGAATTGTTAGATGGTGCACCGCCTGGAACTATTGCTATATGTCATCCTAGTGGATGGATACAAAGCGAGATTTTTGTTCATTGGCTTGGTCACTTCATTGAAAGCGTCAAACCCACTAAGAATAATTCTGTATTGCTTTTGCTTGATGGACATGCCACGCATATCAAAAATCTTGCATTGATAGAAAAAGCACGAGCAAATGGAGTCATCATAGTTAGCTTTCCACCACACTGCACTCATCGTCTGCAACCCCTCGACGTTAGCTTCATGGGCCCACTAAGTACCTATTACAGCCAAGAAGTGATGACATGGCTGCGTAATCATCCAGGTCGTGTTGTAACTCAATTTCAAACTGCACAGCTTTTTGGGATTTCATATGCGAAAGCGGCGACTCTTCAAAATGCAATGAGTGGTTTTTCTAAAACAGGTATTTATCCACTGACTCCGAATATCTTCTCTGATCATGATTTTATTTCTGCTGCTACAACATACATCGATGTCAGATGTACTGACCCTGTGACGAACTCTTCTGAACCAGTTATAGTTGAAACTCAAATTGAAAACACTGTTTTTAACACCAACTTAGCTAAATGTAACACTGTGCAAGAACACCAGCGTCAGGTTTCAGAAGCTTTAGTATTAAATCCACAATCAATCCCATCGCAGCAGCCAGCAGGTAGCCCACAACCAAGTACATCCCAGGAATCGCAGTCTTTAGCTTTTTCGCCAGCTGATATTTTACCTAAGCCTCATGTCGCAAGAAAAATATCTACAAAAGCTACAAATGCTCGTAGAGAAATATATGGCAACACCAGATCCAGTGACGATTGGGTGCAATGCCTGACATGCAAAAAATTGGCTCATGAAGGCTGTACAGGCTGGGAACCCGAGGAGCTGGACCAATTCAAGTGCTTCAGATGTTAG
- Protein Sequence
- MPRNYKRTTNRKSWSEEGMKKAILEVIEGKFGYRIASRNHSVPQSTLEDRLTKKIQFISTLKTLKLSYLDLPIEMFVNSHFKWLKKNGLNHNFNKDTGLAGMDWLYGFLRRHPDLSLRLPEPTSVARAMGFNRINVSKFFSLLTELQEKYNFRPTNIYNVDETGITTVPKKRSKLTAVKGKKQVGLISSAERSQLMTAVLCMSAAGVYVPPLLIFPRVRMKAELLDGAPPGTIAICHPSGWIQSEIFVHWLGHFIESVKPTKNNSVLLLLDGHATHIKNLALIEKARANGVIIVSFPPHCTHRLQPLDVSFMGPLSTYYSQEVMTWLRNHPGRVVTQFQTAQLFGISYAKAATLQNAMSGFSKTGIYPLTPNIFSDHDFISAATTYIDVRCTDPVTNSSEPVIVETQIENTVFNTNLAKCNTVQEHQRQVSEALVLNPQSIPSQQPAGSPQPSTSQESQSLAFSPADILPKPHVARKISTKATNARREIYGNTRSSDDWVQCLTCKKLAHEGCTGWEPEELDQFKCFRC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786724;
- 90% Identity
- -
- 80% Identity
- -