Pari002540.1
Basic Information
- Insect
- Phengaris arion
- Gene Symbol
- -
- Assembly
- GCA_963565745.1
- Location
- OY751431.1:36122843-36124672[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-06 0.00043 21.2 0.0 2 38 16 52 15 57 0.91 2 2 7.8 1.6e+03 0.1 0.0 19 30 363 374 358 386 0.75
Sequence Information
- Coding Sequence
- atgcCACGAAATTATAAAAGGACGACTAATCGACAATCTTGGAGTGAAGAGGGTATGAAAAAAGCTATTTTAGAGGTAATAGAGGGAAAATGTGGTTATCGCATCGCTTCTCGAAATCATTCTGTACCACAATCAACACTTGAAGACAGAGtaagaaaatatagaaaaaataacgATATGGAAAATGCTGCTCAAAAAGGCCTAGGAcgctttaaaacaatttttacagtTGAccaagaaaatttaatttatcagcaCATAAAAGACCTTGAAGCTCAGTTGTTTGGACTTAGCTATAGAGATGTTCGTCAACTAGCATTTGAAATGGCTGAAAAAAATAgcttaaatcataattttaacaAAGATACTGGATTAGCTGGAATGGATTGGCTTTACGGATTTCTACGACGTCATCCTGATTTGTCGTTACGCCTTCCTGAGCCTACATCAGTTGCGCGTGCGATGGGATTCAACAGGGTAAATGTCTCTAAGTTTTTCTCCCTACTAACAGAATTGCAAGAGAAATACAATTTTAGACCAACCAATATCTATAATGTCGATGAGACAGGCATCACGACCGTCCCTAAAAAAAGGTCAAAAGTAATTGCTGTAAAAGGTAAAAAGCAAGTAGGTCTTATCTCTTCAGCTGAAAGAGGCCAATTGATGACCGCAGTTTTATGCATGTCTGCTGCTGGTGTCTACGTTCCACCGCTATTAATTTTTCCGAGAGTCCGTATGAAGGCTGAATTGTTAGATGGTGCACCGCCTGGAACTATTGCTATATGTCATCCTAGTGGATGGATACAAAGCGAGATTTTTGTTCATTGGCTTGGCCACTTCATTGAAAGCGTCAAACCCACTAAGAATAATCCTGTATTGCTTTTGCTTGATGGACATGCCACGCATACCAAAAATCTTGCATTGATAGAAAAAGCACGAGCAAACGGAGTCATCATAGTTAGCTTTCCACCACACTGCACTCATCGTCTACAACCCCTCGACGTTAGCTTCATGGGCCCACTCAGTACCTATTACAGCCAAGAAGTGATGACATGGCTGCGTAATCATCCAGGTCGTGTTGTAACTCAATTTCAAATTGCACAGCTTTTTGGGATTTCATATGCAAAAGCGGGGACTCTTCAAAATGCAATGAGTGGTTTTTCTAAAACAGGTATTTATCCACTGACTCCGAATATCTTCTCTGATCATGATTTTATTTCTGCTGCTACAACAGATATTGATGTCACATGTACTGACCCTGCTATGAACTCTTCTGAACCAGTTATAGTTGACACTCCAATTGAAAACACTATTGTTAACACCAACTTAGCTAAATCTAACACTGTGCAAGAACACCAGCATCAGGTTTCAGAAGCTTTAGTATTAAATCCACAGTCAATGCCATCGCGGCAGCCACCACGTAGCCCACAACCAAGCACATCCCAGGAATCGCAGTCTTTAGCTTTTTCGCCAGCTGATATTTTACCTATTCCTCATGTCGCAAGAAAAATATCTACAAAAGCTACAAATGCTCGTCGAGGTAAAACTGCTATTATTACTTCGTCGCCGTATAAATTAGAACTCGAAGAAAatgccaaaaaaataaataagaaaatttttCCTAAACTTAGAAATGACTTAGCGAATcccaaaatgtcaaaaaaagagAAGATTTCAGATGATATTTGCATTTATTGCACAGAAATATATGGCAACACCAGATCCAGTGACGATTGGGTGCAATGCCTGACATGCAAAAAATGGGCTCATGAAGGCTGTACAGGCTGGGAACCCGAAGAGCTGGATAAATTCAAGTGCTTCAGATGTTAG
- Protein Sequence
- MPRNYKRTTNRQSWSEEGMKKAILEVIEGKCGYRIASRNHSVPQSTLEDRVRKYRKNNDMENAAQKGLGRFKTIFTVDQENLIYQHIKDLEAQLFGLSYRDVRQLAFEMAEKNSLNHNFNKDTGLAGMDWLYGFLRRHPDLSLRLPEPTSVARAMGFNRVNVSKFFSLLTELQEKYNFRPTNIYNVDETGITTVPKKRSKVIAVKGKKQVGLISSAERGQLMTAVLCMSAAGVYVPPLLIFPRVRMKAELLDGAPPGTIAICHPSGWIQSEIFVHWLGHFIESVKPTKNNPVLLLLDGHATHTKNLALIEKARANGVIIVSFPPHCTHRLQPLDVSFMGPLSTYYSQEVMTWLRNHPGRVVTQFQIAQLFGISYAKAGTLQNAMSGFSKTGIYPLTPNIFSDHDFISAATTDIDVTCTDPAMNSSEPVIVDTPIENTIVNTNLAKSNTVQEHQHQVSEALVLNPQSMPSRQPPRSPQPSTSQESQSLAFSPADILPIPHVARKISTKATNARRGKTAIITSSPYKLELEENAKKINKKIFPKLRNDLANPKMSKKEKISDDICIYCTEIYGNTRSSDDWVQCLTCKKWAHEGCTGWEPEELDKFKCFRC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786724;
- 90% Identity
- iTF_01178498;
- 80% Identity
- -