Hhel000296.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- -
- Assembly
- GCA_963853865.1
- Location
- OY971414.1:2867266-2869137[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-08 2.8e-05 24.6 0.0 3 40 17 54 15 57 0.88
Sequence Information
- Coding Sequence
- ATGCCGAAAGTACGCGTCAGGTCAACTGAAAAGGCTTCCTGGTCTTCTGATACCCTAGATAAAGCTATACAGCTCGTTGATGGCGGTTCTTCTATAAGAAATGCTGCTAAAGTAATGGGAATCCCTTTTTCAAGCCTTCAGAAGAGGATAAAAAAAGGTTCTACCAAAGGACCACATCTAGGACGATTCACTGTCTTTAGTCCTGAGGCAGAAGCCGAGTTAGCGAACTTGGTGAAGAAAATGGCAAATATTTTCTATGGTTGCACTGCAATTCAAATCAGAAAAGTCGCTTTCGAATATgctgaaaaattaaatttgaagcACAATTTTAATCAAGCTTCAAAAATGGCTGGACGGGATTGGTTGCATGCTTTTATGACTAGAAATAACATTTCTATTAGAAAACCGGAAGCGACCAGTATAAATAGAATCACGGCCTTTAATAAAACAGAGGTAAGTCTGTTCTTTGAGCTACTTGGGCATCTGATGGAAAAACACCGATTcgttccaaaaaatatttacaattgcgATGAAACCGGTATTTCAACTGTTCAAACACCGGGAAAAATTTTAGCTGCAAAAGGACAGAAGAGAGTAGGATCTATCACCAGTTGGGAGAGAGGAAAAAATATCACCTTGTTGTGTGCTATGAGCAGTGCTGGAGGGTACATTCCACCTATGTTTATCTTCCCTAGGAAAAGGATGACTCCTCTACTTGAGAAGGATGGTCCAGCAGGCGCGCTTTACAAATGTTCAGACAACGGTTGGATCAACGAGCATCTCTTTCTTGAATGGTTAGCTCATTTTAAACAGCACGCTAAACCGTCTACAGATGAACCCATCCTTTTAATACTAGACAACCATGCTAGTCACATTTCTCTTTCCGTCTACGAATATTGCAAGGCCAATCACATTCATATGTTGTCTCTGCCCCCACACACGTCTCATAGAATGCAGCCCCTTGACGTTTCTTTTTTTGGCCCACTCAAAATGGCCTACAAAAAAGAATGTGACTTGTTTTTAAAAAGCCATCTAGCAGAAAAGATAACACCTTACGACGTAGCATCCTTGGTGAGGAAAGCATTTAATAATGTTGCTTCTATTAGCAAAGGAGAATCGGGGTTTAGATCAactggaatatttccactaaaTCCGGAAGTATTCACAGAAGAGGATTTTCTCGCTGCAGAAACTCTCCAATCTGACACCGTTGTAATACAAGACTGCAATGAATCTCTCGCAGCTACCTGTATGATTCCCAGCACATCAAAAGAACCAGTTCCGAGCACGTCAACACAAATTGTTTCACCAGATCTCATGATGTCTAATCAAGAAGTTCCACTTGATTCTGAATCAGATGTTGTACCACAAATTCCTGGTACGCCTAAACAATCTAGTATATTGCATGATTTAATAAAACTGCCAGAGAAAGCATCTGCTATTAAAACAAGACAGGTTCGAAAGAAGCAACACGCTACAATTTTAACTTCAACGCCACTCAAAGAAAATCTGctagaaaaggaaaaaaataaaaagaagaaagaaggaGGTAAAGGAAAAGAGAAGACATTGAAAGGCAAAGGACGAGGCAAAAAGACTAAAGTACAGAAGAAGGAACTTGAAAAGGCTAAGCGCCAAGTATTGCAAGAACAGAATGAAACTTCTGTATCAGATGTGGGCACTGACGACTTATGCCAGGACGATGAGGATGATGACGCAGAAGATGCAACAAATGGAAACAGATGCCTAGTGTGCGATGAAATCGGTAGAAACAACGAGATGTGGTACAGGTGTACCTCGTGTGGACAATGGGCTCACGCGGAGTGCACTGGGTGGGAGTCAGCTGTAGGTTATGTTTGCGACCTATGCTAG
- Protein Sequence
- MPKVRVRSTEKASWSSDTLDKAIQLVDGGSSIRNAAKVMGIPFSSLQKRIKKGSTKGPHLGRFTVFSPEAEAELANLVKKMANIFYGCTAIQIRKVAFEYAEKLNLKHNFNQASKMAGRDWLHAFMTRNNISIRKPEATSINRITAFNKTEVSLFFELLGHLMEKHRFVPKNIYNCDETGISTVQTPGKILAAKGQKRVGSITSWERGKNITLLCAMSSAGGYIPPMFIFPRKRMTPLLEKDGPAGALYKCSDNGWINEHLFLEWLAHFKQHAKPSTDEPILLILDNHASHISLSVYEYCKANHIHMLSLPPHTSHRMQPLDVSFFGPLKMAYKKECDLFLKSHLAEKITPYDVASLVRKAFNNVASISKGESGFRSTGIFPLNPEVFTEEDFLAAETLQSDTVVIQDCNESLAATCMIPSTSKEPVPSTSTQIVSPDLMMSNQEVPLDSESDVVPQIPGTPKQSSILHDLIKLPEKASAIKTRQVRKKQHATILTSTPLKENLLEKEKNKKKKEGGKGKEKTLKGKGRGKKTKVQKKELEKAKRQVLQEQNETSVSDVGTDDLCQDDEDDDAEDATNGNRCLVCDEIGRNNEMWYRCTSCGQWAHAECTGWESAVGYVCDLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01561953;
- 90% Identity
- iTF_00786722; iTF_00786723; iTF_01248070; iTF_01248058; iTF_01248059; iTF_01248060; iTF_01248061; iTF_00786720; iTF_00720230; iTF_01561953; iTF_00720231; iTF_00720232; iTF_01090697; iTF_00282286; iTF_00290640; iTF_00125078; iTF_00038711; iTF_01028233; iTF_00794512; iTF_00967968;
- 80% Identity
- -