Hvir008989.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- ZNF296
- Assembly
- GCA_002382865.1
- Location
- NWSH01002900.1:17647-19258[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1e-07 0.0015 18.3 0.9 5 48 165 209 161 214 0.88 2 6 0.00046 6.9 6.6 0.0 21 44 244 267 239 274 0.87 3 6 0.00017 2.5 8.0 0.1 25 47 304 326 298 330 0.91 4 6 0.052 7.8e+02 0.1 0.0 26 53 333 360 326 361 0.84 5 6 4.6e-05 0.69 9.8 0.1 7 48 367 408 363 412 0.95 6 6 0.46 6.8e+03 -3.0 0.1 4 16 459 471 456 471 0.79
Sequence Information
- Coding Sequence
- ATGAAGACCAATTTGTGCAGGTTGTGTTGTCAGAATGAAGGCactgtttatattttcaatagcAAAGTGGAAGATATTGAAGTAAGctcaaaaataatgtattgttgtccaaatataaacattaaagGTGATGATGGACTTCCATCAAGTATCTGTAATAACTGTAATGAAGACCTGGCTATTTGCTATCAATTTATTCTTAAATGCGAAGCATCGGACAAGAAATTGCGTTCTCAATGTTTGGCTTTGAAGGTGATATCTAAAGTTATGTCAGACTTGGGCGACTGTGAGCCGAAGCTGGAAGTGAAGAGCGAAGCCGGCGACAGTGACGGTGAACAACTTTACGTAGAAGACGAGGATATTCCTCTTGAACAAATTAAGCTAGAGCAGTTGCCAACTGTCGAACCTAACATAATCCCCCGCAAACGTAGAACCTACACAGTAAGATCAAAATGCAAGGATATGCTAGCATACCCATGTGCAAACTGTGGCCGAGCATTTGCAAATCCTTCAACATATAAGGTCCACATGAGATCCCACACTGATGAGAAGCCACACTCTTGTCCTATGTGTGATAAGAAATACAAGGACAGCAGTGCATTAAAACGACACATAGACAATGCACACTCTCAAATACCAAGGAGAAGAGAGCGAGACTTTGTTTGTGAACACTGTGGCAAAGCCTTCTATGGGAAAGCTGATGTTATCATTCATATGCGTACACACACTGGAGAAACTCCATACAAATGTACTATCTGTGGTGCAAAGTTCACACAGATCAGTGGATTACAAAGACATAAGAAAAGGCACACTGGTGAGAAGAACCATTTGTGCACAGCCTGTCCAAAGACATTTTGTACAAAAGAGGAACTAAAGAACCACCAGTTGGTGCACAGCAATGTGAAAACATTCACTTGCTCTTTGTGTAACTCACAGTTCAAGTACAAGAATAATTTAAGGAAACACATGAATCTACACTCTGAATCCAGTAACTTTGTATGTAGCTATTGTGGACGTACTTTCAAACTAAAGGGAAACTTAAAGATTCACATAGATTCCCAACACTCTGAGAAGTCTGGCTACTGCAATATTTGTATAAAGCATGTTCCCAACATGGAGATGCACATGTGGAGGCACACGGGGCAGCGCCCCATCAAGTGTGGGCTCTGTGAGAGCAGCTTTTTTGAACACAAGGCTTTGGCCAGACATATGAACTTCAAACATACTAAAACTGATAAATATAAGTGTGAATTTGAAGGGTGCAATCAGTCATATCCCTCTAAACCAATGCTAGACTTCCATTTCGCCAAAGTACATACTACTGATATCCCATTCCCTTGTGATAGGTGTTCAAGGGGATTCTATAGGAAAAACGATCTTGCCAGACATAAAATTGGTACTCATAAAGAGAGATTAAGTTAA
- Protein Sequence
- MKTNLCRLCCQNEGTVYIFNSKVEDIEVSSKIMYCCPNINIKGDDGLPSSICNNCNEDLAICYQFILKCEASDKKLRSQCLALKVISKVMSDLGDCEPKLEVKSEAGDSDGEQLYVEDEDIPLEQIKLEQLPTVEPNIIPRKRRTYTVRSKCKDMLAYPCANCGRAFANPSTYKVHMRSHTDEKPHSCPMCDKKYKDSSALKRHIDNAHSQIPRRRERDFVCEHCGKAFYGKADVIIHMRTHTGETPYKCTICGAKFTQISGLQRHKKRHTGEKNHLCTACPKTFCTKEELKNHQLVHSNVKTFTCSLCNSQFKYKNNLRKHMNLHSESSNFVCSYCGRTFKLKGNLKIHIDSQHSEKSGYCNICIKHVPNMEMHMWRHTGQRPIKCGLCESSFFEHKALARHMNFKHTKTDKYKCEFEGCNQSYPSKPMLDFHFAKVHTTDIPFPCDRCSRGFYRKNDLARHKIGTHKERLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785685;
- 90% Identity
- iTF_00786200;
- 80% Identity
- iTF_00786200;