Hvir008848.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- Mbd3
- Assembly
- GCA_002382865.1
- Location
- NWSH01002469.1:39183-45931[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-28 1.5e-24 85.2 0.1 1 72 8 74 8 78 0.95 2 2 0.00026 0.78 9.1 0.0 29 74 96 149 81 152 0.86
Sequence Information
- Coding Sequence
- atgaGTACAATGAATATATCTATAGAGAAGAAAAGATCCGACTGTCCAGCCTTACCCAAGGGCTGGCAAAGGGAAGAAGTTCTCAGGAAAACAGGCTTATCTGCCGGAAAAGTTGATGTTTACTATTACAGCCCAACAGGTAAAAAGTTTCGCAGTAAGGCTGAGCTAGTTCGTTATCTGGGTGATAGTATGGACCTGTCGTGTTTCGACTTTCAGCAGGGTCAGATAAACACAATGCTGCTGTGCAAGGCCAAGAAAGCACGCGCGCAGTTTGACTACAGGGGAGTCCGATCTGATGCCTCTTTGGTACCTCCTATTCGCCAGACGGCGTCTATATTCAAGCAGCCTGTCACTGTCTATAAGACACAGGAAAGCAAAGTGAAAACTGACCTCAAACATGGTACACAAGAGAAACCAAAACAGTTATTCTGGGAAAAGAGGCTAGAAGGCCTGACGGCGTGTGATGCGGATGGAGTGAGAGGCACAACTTCCCTGCCCAAATACATCAAGCCCTTGGGCCCATACAACTCAGATGCTACAATTATTCAGTCCCTTGCAACGGCACTCCATGTTTCTTCTCAGCCTATTacagGCCAAACCGGATCTAAGCAGTCCATACTGGAGAATCCTGGTGTTTTTTTAAACCCTGAGCAGCCGCTTATCGCGGCTGTGACAATTACTAAGGACGACGTGCGACGGCAGGAGGAGCGCGTGCGCCGCGCGCGCCAGCGCCTGCAGGAGGCGCTCGCGGTCGCATAG
- Protein Sequence
- MSTMNISIEKKRSDCPALPKGWQREEVLRKTGLSAGKVDVYYYSPTGKKFRSKAELVRYLGDSMDLSCFDFQQGQINTMLLCKAKKARAQFDYRGVRSDASLVPPIRQTASIFKQPVTVYKTQESKVKTDLKHGTQEKPKQLFWEKRLEGLTACDADGVRGTTSLPKYIKPLGPYNSDATIIQSLATALHVSSQPITGQTGSKQSILENPGVFLNPEQPLIAAVTITKDDVRRQEERVRRARQRLQEALAVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090793;
- 90% Identity
- iTF_00000356;
- 80% Identity
- iTF_00907908; iTF_00449129; iTF_00726383; iTF_00831247; iTF_00783504; iTF_00364049; iTF_01538769; iTF_00374140; iTF_00784414; iTF_01118335; iTF_01342239; iTF_00906176;