Basic Information

Gene Symbol
Zfa
Assembly
GCA_958496145.1
Location
OY292326.1:8921964-8930362[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.0077 0.5 11.3 1.5 3 23 646 667 645 667 0.96
2 23 0.23 15 6.6 0.3 1 22 1069 1090 1069 1090 0.95
3 23 8.2 5.4e+02 1.8 0.4 1 22 1132 1153 1132 1155 0.82
4 23 0.018 1.2 10.1 4.8 2 22 1165 1185 1164 1185 0.93
5 23 2.2 1.5e+02 3.5 0.1 3 23 1194 1215 1192 1215 0.89
6 23 0.019 1.3 10.0 0.2 3 23 1236 1257 1234 1257 0.96
7 23 0.0041 0.27 12.1 3.5 1 23 1263 1286 1263 1286 0.95
8 23 0.14 9 7.3 0.0 1 23 1312 1335 1312 1335 0.90
9 23 0.021 1.3 9.9 3.4 1 23 1340 1362 1340 1362 0.97
10 23 0.0096 0.62 11.0 0.2 1 23 1368 1391 1368 1391 0.95
11 23 0.0025 0.17 12.8 1.3 1 23 1404 1426 1404 1426 0.97
12 23 0.00019 0.013 16.3 1.8 1 23 1476 1499 1476 1499 0.97
13 23 0.0052 0.34 11.8 1.7 1 23 1559 1582 1559 1582 0.96
14 23 0.0026 0.17 12.8 2.1 2 23 1609 1631 1608 1631 0.95
15 23 0.043 2.8 8.9 0.1 2 23 1637 1659 1636 1659 0.94
16 23 0.011 0.69 10.8 0.2 1 21 1703 1723 1703 1724 0.95
17 23 0.00046 0.03 15.1 1.0 1 23 1734 1756 1734 1756 0.93
18 23 0.00012 0.008 16.9 0.3 2 23 1849 1871 1849 1871 0.93
19 23 4.3e-07 2.8e-05 24.7 1.4 3 23 1878 1898 1877 1898 0.98
20 23 0.033 2.1 9.3 0.4 1 23 1916 1938 1916 1939 0.95
21 23 0.2 13 6.8 0.0 1 23 1962 1984 1962 1984 0.97
22 23 0.03 2 9.4 0.6 1 23 1990 2013 1990 2013 0.95
23 23 0.00028 0.018 15.8 0.4 1 23 2021 2044 2021 2044 0.96

Sequence Information

Coding Sequence
ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCTTCTAAAATCAAGGATTGTGTGTCCGTACAGATAAACGAAAATGACGACCTGCCCACTAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGgcatgtatttaaaaatgtatgtgaaaGGACACAAAACAAACTACAGTCTCTAAAAGATGGCAGCCAACTAGAAGAGgtgaaaataaaaagtgaacCACTATCTGATGAGGCTTATGATGATGGAGTGGTCATTGATGGCTCATATCCTGTCATTGAGAATGCCGGCTTGTCAAACAAAGTGCAACCTGAAGGTCCCCCAATCTTGGCTTCATTGGGGCTCACACCAAGAAGTGATAAGAACTGTGTGGATCCTCGAATGGATTGGCATCGGGTCCATGCAATTTTGGACATGGTTCAAGACAATGAGGTGATTGATTCTCTACAGACAAAAGAAGAGTGCGATGTTTTGCAGCATTCTGATCATGATTCTGATACAGAGGCTGAACTCCAACCAGaaattgatgatgattttgttgATTGCAAAAGCGGTTACATTTGCAAAAATAGGAAAGTCATATCCAAAGCTCCAAAACTATCAAATTCTGTCAATAATGCTAGAATCAAGGAAGCTTTCAAACTCAGAAAACGTAAATCAGAAGTCCGTAAACATTGTGCACGACCTAAAAATGCGTGGCAGTTGTTATTCACAGATGACCTACTAGAATTGATTGTCGCTTCaactaatgaaaatattgtgaCAAATGGGAAAAGTTTCATGGACTCGACGAGCGTCAGCGAAATTAAAACGCTTATCGGTATACTATATTTGCATGGCATAATGCGGCCGACGCATCAGAAATGTTCTGACCTTTGGAACAGTGAATGCGGTATTCCCTGCGTCAGAAATGTCATGAAGTACGAAAGGTTCAAATACCTGCTACAAAACATCAGCTTTGATAAAGAGAATGACGACGGTATTATACAGTTCGACATAATGAAGCGTATGCGGAAAGTATTTGAAATCTTCGCCATGAATTGCAGAACATCTCACGACATCGAGAACATCGCGGTTATTGATGAGATCATCGTGCCAGTTTACGGACCTTGCCCATTTCGATATGAGATTGATAAGAAACCACTGAAGCGGGGTATAAAAATGGTACTGCTAGTTGATTCATCTACATTCTATATGAGCAACTTAGACATCATAACCGATCCTTACTTTGGTGCTGAGGAGGTTACGAAAAAGTTGGTTCATCATTTAGCTGGATCCGGTCGATCTATTGTGATGGACAGTTGGTTCACATCTACTACATTGTTTGATTGCCTTAAGAATGAGTACCAGCTATTTTCCATTGCAGCGTTGCATCCAAACAGTGATATGATACCACCACTATTTCTTTCACAATACAGGAAATGTGGAACATTCATGTCTGGATTTATTGATCATGAAGTGTCATTAACATCTTATGTCAATACTGAAGGAAAATCAGTGAATGTATTGACCAATGAACCAAGATATTATCGGAAAGGTCATATAAATCATACTACAGTAGTATCCGTGTACAAGAAGAATCAGTCAGCTGTGGAAGTAGTTGATGTTCTCATGAATTATTACACTACTATGCAACACACAAATGATTGGACTTTGTCCTTATTCTTTACATTACTGAACATAGCCACAGGTGCAGAGAGTGAAAACAATGAAGAAGAAGAGGAAGAAATAAATGAGCCCATACAAAACTACCCAAAAGTTCCGCACATGCCGGAGGTCTCCATAACAGTGATGAGGCCTACTGGCGAAACCTTGCACGCTCGACAAGGCATCCACCAACTCGCGTCCAAGGACTGCCTCGTCTGCGGACGATCCTACAGGTACTCACACAACGCCCGCCGACATGAACTCACCTCCCACAGCTTTGACagatacacaaacaaaatcacCCCTAAGAAAACTCTCACTCATCTACAACCAAAACTCAGACCGAACCCGTTCAACCCCAAAGCACGGATGATGCCGAATCCTATTAGCCATAAAATGCAATTCATGAATAAAAACATCCCAGCGAAAATTATGCCCATGAACAAAGTTGTAACGCCACAGAGACCAATTCCAATCAAAACTTCAAAGGTATCGCAAAATAACTTGCCTTATCCTCTTCGCATTAAAGCACTCAAAGATttgcaaataaagaaaaaggaACCACAGATCCTTAAGACTTTACTGACCTCTAAACCTGAAGTACTGGTATCGGAACCTGAAATCTTAAATTCTGGACCTGAAAGTCCAGAAACATTGATATCCGAACCTGAGATTGCGTCTTTTCAAGTTGAGGCTATTCTCACGGAACCCGACGCAGATGCTATTATAACGGAACCGGACGCCGATGCGTACGATCTTCAGCAAGGTGACGAGGAAGCTGATGAAGAAATGCACAACAatcaaaatcaacattatgacACCGTTGATATGGACTCGGAAAACGAAATCGAGATTGCTCGTCAACAAGCCATTGGGCAAGAAGGTGATGAAAATGCTGATGGCGATGAAAATGTTGATCAGTGTGAGGATGATAACAATATGGAAGGTGCTCAAAGCGATAACGAGAAAGATGTTAACGATGATACCGCAGAAAGCCAAGAACATATGGAAGAAGATGACAGTGTTGATATTAAAGCCGAAGGTGAAATGAAGGACGATGACGGCCAAGAAGAGAGAGAACATGAAGACGGAGAACACGATGGAGAAGAAGATGGTGAGATGAATCATAACGAAGGTGAGGAAGAAGAAGATGACGACCTTCCAATGACGTTAGCCCCAGTTGTCGAAATAAATGAGGGCTTACAAACTAATTCTTTCAACAGCGAAGTAAATGAAGACGACGAGGAACTAGACGAAACTGCTGATCCTAATGATACCATCGACGATGATGACCAGGTGAAAGAACTTGACCCAGACAAAACTTATGTTACTAAAACCCAAAGAGATTTCATCCAAAAATATCGCGACATCATTCAACAAATCAACACAAAGCGTTGTTTGTGCTGTGATCGGGAGCATCCCCGTAGGAAAGCAGTTATACAACACTTGCAGAAAAATGGCCACAAAGTACCAAAACACACATGTTATAACTGTGTCATCACATTCGGCCACATTGGCGCTTTACTCAGCCATATGAGGTCGAACTCTTGTACCAATTTgtggaaaattatttacaatgaaaatgGCATTACTGATGACTTAGTACTCGAAGATGAGCCGAAAGAGGTCAAGGTACAGTACAAAGATATCTTCAATGCCAGATCGTACGCGTGCAAGCTCTGTCCAGCTAAGTTCCAATTAAAACAGTTTATCATGAAGCATGTTTTGGATACACATGAAGACGGACAGTCGCGAGTGCCCCTCTGTTGTGTACACTGCCGTTCTAGATTCAAAGACAAAAGTTTACTCAAAAAACACATTCGTAAAGGTGAATGTACAGTTTATATAGCTTGCGATTTATGTACAGAAAAGTTCGGGAATATGCAAGACTTCAACGATCACGCTTTAGCTATCCACGCTGGCAGTTTCGATCAGTCTGATAATCAAAGTAAATGTGTCGACGGTCGACCGACTGACTGTCCATTGTGTGGAAAGAAAAACAGCAGCTATCCGAATTTAGTGAAACATTTGAAGATTATTCACAGCGAGGAGAAACCTCATTACTGCCAGCATTGTGATTCTAAATTCGAACAAGCTACTGATCTGAACAAACACATTTACATGGAGCATTCTGACCGAACCTTAGGCATGGCTAGCACCGAGCCAGATATGTCCATTGTAAAGGAAGAAGCTGAGGAGTATCATTACTCGTGTACGGAATGTAATGCCATATTCGAAACTGTTGATGCTTGGACTGATCACCAAGTCGCGGAACATAACCAAGTGGCTCACCATTGTGACCAATGTGAGAAGAAATTCCTTCGTCCCTCAGAGCTCGCGGAGCATAAGAATACTCATTTGAGGGTTAAATTCTACCCTTGCAGTGTCTGTCCCAACTCTTACAGCACTCCTCAGAAACTGTCTGAACATGTGCAACAGACACATGCGGGAATCGGCGCAGTCGCGGCTACTGAATCTGAGTTTTTCTGCGACATTTGCATCAGGTCATTCAAAAGTCGTCAGGCATATTCAAACCATATGCGTATTCACGCTAAAATACCAACCACAAACAGGAAACCAGGCGTAATTAAAGGCGGCTTTGCGCCACAAATCATAGGAAAACCCATTAAACAATACCCCGTAGTTCAACCTGGGTTTGTATCATTTAAACCTAATTACAACATACCTAACGCTCCCTACTCATGTGACATTTGCGGCAAAGGATTCATGCATAAGAAGAATATATGGAAACATAAGAAGGTATTGCATGCAGATATTCTAGTTGATAGACATGACAGTGAAGAGAACACCATGCAAGCCTCGACTGAAGAGGAAGAATTCAATCCTGACGAGAATGGCGCCGCACTCTCAACGCCgcaatttaatagttttaacttttctaatttcCCAAACAATGTACAACAAGCGACACCAGAAACAATGCCTTACTCGTGTGAATTGTGTTTTAAACGGTTCCCGCTTAGGACTAGTTTGTGGAAACACAAGCGCGCTAAACACGGAATCGTAAATCCTAGCACAAGTGGTAGCAACGATACGTCCACACCATCGGTTAGTGGGGACAACAGTAGTAGGTCTAGTTGCACTATATGTAGGATCACGTTTTCAGACAAAAAATCTTACTATCGCCACCGAAAGAATGTCCACAAGTCCACCATTCAAATGTGCAAAATATGTGGCAAACCTCTAAGTTCAACCTTGGAGTTGTATGAGCATTTGAAGGCTGCCCACGCAAGGGAATTGCTAGGTTATAACGCCAATCAAGGTTCAAGTAAATCTCAAGACATGACACAGGAGATGGAACCCGATTATGAAAACGATCAAGAATCCGCTGATCCCAGCGTAGATTATCAAGCGAGATACCCCTGCGACACATGTGGCAAACAGTTTGTTGGTTTGCTTGCTTTGCAAAACCACCAGTGCGTCAATCAGTTACCATCACAACCACAGACATTCGACTGCGAGATTTGTCATAAAAGTTACACTTCAATATCAGCCCTAAAAAGCCATCGCGGTTGGCATTTACGTTCACCCGACGGAAAAGCGGCCGCTAATAATTCTGGGCTTTGGATGCCGCAGCACAAAGTTACTAGCAAGATAAGCAAACACGAAGTCATAGACCCATCGCAACTTGCTAAGGTCACACATACTACGACTCCCGCACCTGTCTCCGCTACCGCAGCGAAAAGAAGACTACCTCCAGAGGTCGAAGTAACCGTTGTGAATCCAAACAAGAAATTACGATCAGACGATTCTGTCGATATGGATATGCAGAATTCAGGTTCTATGGAGGATAGATACTGCACAATATGTGACAAGGAGTTTACAAAACGAGCGGCCTATCAGCGCCACATGGACGAAGTGCACCAACCGAACTCCGTGTTTTGCCCGGTCTGTGATAAGAGTTTTACTAGAAAGTCGACATTGCTCATTCACATGAAAAAACATTACGAGAGTGGAGAAGGCAGTTCCTCTGCTACAGGTCAGGGGGACGATGATTTCTCTTGTGATCTATGCGGCGCGCAGTATGACAATGATCAGGCCTTGAGGGCACATCGTGCGAGACATCACGGAGAAGAAGAAGAGTCTGCGGAAGAAAGtgatgacggaaatgttcctGCAGCTCCTCCTGGTGAATTCACGTGTGCCCAATGCGGCGATGGCGTCGCTACGCCTAGAGACCTCATCGCCCACCGCACGATGCATGCTACTCCCACCAAATTCTTCTGTAACATATGCAAAGTGTACTTCGCTCGGGCACTCGACCTCTCCTCGCACACCCGGGCACGGCACGCAGACAACGAAAAAGTATTCTTCCCTTGTGCCATGTGCGACAGATTTTACATGAACAAGAAGAGCTTACAGCGACACATTGAGATGGCTCACTGA
Protein Sequence
MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIKDCVSVQINENDDLPTNVCRKCMDNVNNWHVFKNVCERTQNKLQSLKDGSQLEEVKIKSEPLSDEAYDDGVVIDGSYPVIENAGLSNKVQPEGPPILASLGLTPRSDKNCVDPRMDWHRVHAILDMVQDNEVIDSLQTKEECDVLQHSDHDSDTEAELQPEIDDDFVDCKSGYICKNRKVISKAPKLSNSVNNARIKEAFKLRKRKSEVRKHCARPKNAWQLLFTDDLLELIVASTNENIVTNGKSFMDSTSVSEIKTLIGILYLHGIMRPTHQKCSDLWNSECGIPCVRNVMKYERFKYLLQNISFDKENDDGIIQFDIMKRMRKVFEIFAMNCRTSHDIENIAVIDEIIVPVYGPCPFRYEIDKKPLKRGIKMVLLVDSSTFYMSNLDIITDPYFGAEEVTKKLVHHLAGSGRSIVMDSWFTSTTLFDCLKNEYQLFSIAALHPNSDMIPPLFLSQYRKCGTFMSGFIDHEVSLTSYVNTEGKSVNVLTNEPRYYRKGHINHTTVVSVYKKNQSAVEVVDVLMNYYTTMQHTNDWTLSLFFTLLNIATGAESENNEEEEEEINEPIQNYPKVPHMPEVSITVMRPTGETLHARQGIHQLASKDCLVCGRSYRYSHNARRHELTSHSFDRYTNKITPKKTLTHLQPKLRPNPFNPKARMMPNPISHKMQFMNKNIPAKIMPMNKVVTPQRPIPIKTSKVSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILTEPDADAIITEPDADAYDLQQGDEEADEEMHNNQNQHYDTVDMDSENEIEIARQQAIGQEGDENADGDENVDQCEDDNNMEGAQSDNEKDVNDDTAESQEHMEEDDSVDIKAEGEMKDDDGQEEREHEDGEHDGEEDGEMNHNEGEEEEDDDLPMTLAPVVEINEGLQTNSFNSEVNEDDEELDETADPNDTIDDDDQVKELDPDKTYVTKTQRDFIQKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTNLWKIIYNENGITDDLVLEDEPKEVKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDTHEDGQSRVPLCCVHCRSRFKDKSLLKKHIRKGECTVYIACDLCTEKFGNMQDFNDHALAIHAGSFDQSDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHSEEKPHYCQHCDSKFEQATDLNKHIYMEHSDRTLGMASTEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQTHAGIGAVAATESEFFCDICIRSFKSRQAYSNHMRIHAKIPTTNRKPGVIKGGFAPQIIGKPIKQYPVVQPGFVSFKPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILVDRHDSEENTMQASTEEEEFNPDENGAALSTPQFNSFNFSNFPNNVQQATPETMPYSCELCFKRFPLRTSLWKHKRAKHGIVNPSTSGSNDTSTPSVSGDNSSRSSCTICRITFSDKKSYYRHRKNVHKSTIQMCKICGKPLSSTLELYEHLKAAHARELLGYNANQGSSKSQDMTQEMEPDYENDQESADPSVDYQARYPCDTCGKQFVGLLALQNHQCVNQLPSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVIDPSQLAKVTHTTTPAPVSATAAKRRLPPEVEVTVVNPNKKLRSDDSVDMDMQNSGSMEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSSATGQGDDDFSCDLCGAQYDNDQALRAHRARHHGEEEESAEESDDGNVPAAPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00017541;
90% Identity
iTF_00447463;
80% Identity
-