Hsar016779.1
Basic Information
- Insect
- Heliconius sara
- Gene Symbol
- -
- Assembly
- GCA_917862395.2
- Location
- OU860796.2:18006209-18011899[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.022 1.6 9.7 0.8 2 23 31 52 30 52 0.95 2 21 0.0063 0.47 11.4 0.0 2 23 80 102 79 102 0.94 3 21 0.09 6.7 7.8 0.7 2 23 123 145 122 145 0.93 4 21 0.00015 0.011 16.6 1.3 2 23 151 173 150 173 0.95 5 21 0.15 11 7.1 3.0 1 23 177 200 177 200 0.96 6 21 8.3 6.1e+02 1.6 4.3 2 23 203 225 203 225 0.94 7 21 0.00027 0.02 15.8 1.7 1 23 299 322 299 322 0.93 8 21 0.0012 0.09 13.7 1.2 2 23 417 439 416 439 0.95 9 21 2.7e-06 0.0002 22.1 0.8 1 23 444 467 444 467 0.97 10 21 0.35 26 5.9 0.8 1 23 472 495 472 495 0.95 11 21 0.0019 0.14 13.1 2.4 2 21 498 517 498 520 0.95 12 21 0.01 0.77 10.8 1.2 3 21 525 543 523 544 0.93 13 21 0.0044 0.33 11.9 0.5 1 22 595 616 595 618 0.90 14 21 0.31 23 6.1 0.1 2 23 646 668 645 668 0.95 15 21 0.00026 0.019 15.8 0.1 2 23 691 713 690 713 0.96 16 21 4.5e-05 0.0033 18.2 0.2 3 23 720 741 719 741 0.94 17 21 0.041 3 8.9 3.0 2 23 746 768 745 768 0.93 18 21 0.0069 0.51 11.3 5.0 1 23 773 796 773 796 0.97 19 21 4.6e-06 0.00034 21.3 5.0 1 23 800 823 800 823 0.97 20 21 0.0003 0.022 15.6 0.3 2 23 830 851 829 851 0.96 21 21 2.9e-05 0.0021 18.8 0.3 1 23 857 879 857 879 0.97
Sequence Information
- Coding Sequence
- ATGCCTAACTCTAATACATTGAGGCGGCGAAATCTTCTTATTTTATTCAACAACACATCCATAATTCCTTTTAAGTATCGAGGAAAATGTAGATGCTTTTATTGTGGAGAAGAATTGCCTGTATATGCTGATTTACGTAAACACACTAAAGCACACGGTCCATGCTTCGAAGACGATCGTGCTTTACGATTAGTTAAAACTGATGACGCAGAAGTAAAAGTTGATATATCAAATATTGTTTGTGAAATATGCAACGAATCTTTTGCTACTTTTGAAGAAATAATATCCCATTTGATTTCAAAACACTCATTTTCTTACGACAAAGACGTCAAACTTATAATAATGACATACCGTCTAATAGATTTGCAGTGTCTTTCATGTGATCAAAAGTTTGATCAAGTCAATGAATTAGTTGCACACGTTAATCATAAACATCCAATTCAAAGTCTAGAATGTCAAATTTGTCATCAAAAATTTATCAGAAAACCGTATTTAGATGCTCACATGAGACTTAAACATAAGGATAACTACAAATGTTTAAAATGCTCCCAAATGTTTCTATCCCACTCTTCTCTTGaggaacataaaattaaatcgcATATTGCTGTTTGTAACATTTGTTTTCTGAAATTCTCCTGTCAAAAGAAAAGATTAAAGCATATGAAGTTAGAGCACGCGAATGAACCGCTCAAATGTGGTTTCTGTCTTAAATCTATGAACACGAAGTTAGGATTTTTAAGACACGCCGCTAAATGTACAGAACACGGAATGAATGGAGACGATACGTATATAATAGACGACGACAAGAAACCAGCTGTGATtcaaattagaaataatattgcCTGCATACTTAACATGTCTACAGCTataccttttaaatattttatgaatagatTTAGATGTTTCTACTGCCCTAAAGATTTCACGGATTGTGAAGACCTTAAAGAACACACAGTAATAGAACATCCCGTTTGTGATATTGATTTTAAGTGTATGAGATTACGAAACAGACAGGAAGGaaaacatacaaaatctCATGGTCTTTGTAGTACAAGTGATTACGCCTTGAAACTTATTAAAGGAAGTCATATAGAAGTTAAGATAGACGTTTCAGAGATAGCATGTGACATTTGTTACGAGCCGTTAACTTGTTTTGATGAGGTTGTAGATCATTTGACAAATAAACACGAGTTGGAATACGATAAAAGTATAGATATACCTATACAGGAGTATCAGCTTTCAGATTGTCGATGTCGGATATGTGGTCaagaatttacttattttggtTACTTAATACAACATACTAATATAGCTCATGCTCAAAATACCTTTATTTGTGATAATTGTGGTGAAAAATTCAGTAAAAAACGAGATCTGGCCATACATATGAGACGCTATCACCAAGAAGGTGGATATCCTTGCGATGAGTGTTCAGATTTTTTTGATTCCTACATACTTTTAAGTAAACATaagaataattttcactttagaagATGCAAAATATGTGATTTACGCTTCCCATCCTACACTCTTTTAAGAAGACATATAAAATGTGATCATTCTGATGATAACTGTCCGTATTGTTCAAAAAAATGTCAAACTTCTCAAGGCCTTAAACAGCATATTGCAAAGTGCAGTAAAAGATGGGATGTAAAAGTAAAACAAGCCTTCGATGAAGAAACTATACAACCTAACAAGAAAAAGAATGTTaaccaaataagaaaaaatatactgtgTGTTCTGAACATGTCTACTGCAGTACCATTTAAATTCTTCACAAAATATTCTTGCTTTTACTGTTCTAAAAGTTATGTGGAATTTGATGACCTCAAACAACATGTAGTAGAGGCGCATCCAACTTGTGATCTGaaagaaaaatgtatgaaaaattgtAAAGGTGAAAGGATATCGGTTAAAATCGACATATCATCATTATCGTGTAGAGTGTGCTCTGAATCCATAGATAATGTAGATTCTTTAATAGATCATCTTATAACTAAGCATGGAGCTGAATACGATAAAGCAACAACCGGATGTTTTGAAtcgtttaaaataatcaaagacAGTATTCCTTGCCCAATATGTTCtactatttttagatatttcggATCCCTTCTAAGACATATCAATTCCGAACATAGTAATAATAAcagaatttgtgatttttgcGGCCGTAGCTTCAAAAACGTGGCTAATTTAAAGGTGCATATAACTTATGCGCATACTGGTTCGTGCGAGTGTGACGTTTGCGGCGTAAAGTATAAAAACCAATGGTGCTTAGGTCGACACAAAGCGAAATCTCACAACGCTAAAGATTTCCAATGTACGAAGTGTTCAGAGCGGTTCCAATCACAATATCATAAACAAAAACATCTAATTAAAGTCCATGATATAGGCCATAAATGTTCATACTGTGGGAAAATGTTTACGCGAAATTCTTTTATGAAAGACCACATACGTAGGACTCACTTGAAAGAGAAAAATGTGCCCTGTACAGTTTGCAATGAAaagttttttgataattatcTATTAAGACTTCACATGGTAAAGCATAAAGGCGAAAGAAAGTTCAGTTgtgaggtatgtggtaaagcgTTTTTGAGGCGCAGTAATTTGAGCGCTCACACAgaaatgcataaaaaatatggCCATGTTTAA
- Protein Sequence
- MPNSNTLRRRNLLILFNNTSIIPFKYRGKCRCFYCGEELPVYADLRKHTKAHGPCFEDDRALRLVKTDDAEVKVDISNIVCEICNESFATFEEIISHLISKHSFSYDKDVKLIIMTYRLIDLQCLSCDQKFDQVNELVAHVNHKHPIQSLECQICHQKFIRKPYLDAHMRLKHKDNYKCLKCSQMFLSHSSLEEHKIKSHIAVCNICFLKFSCQKKRLKHMKLEHANEPLKCGFCLKSMNTKLGFLRHAAKCTEHGMNGDDTYIIDDDKKPAVIQIRNNIACILNMSTAIPFKYFMNRFRCFYCPKDFTDCEDLKEHTVIEHPVCDIDFKCMRLRNRQEGKHTKSHGLCSTSDYALKLIKGSHIEVKIDVSEIACDICYEPLTCFDEVVDHLTNKHELEYDKSIDIPIQEYQLSDCRCRICGQEFTYFGYLIQHTNIAHAQNTFICDNCGEKFSKKRDLAIHMRRYHQEGGYPCDECSDFFDSYILLSKHKNNFHFRRCKICDLRFPSYTLLRRHIKCDHSDDNCPYCSKKCQTSQGLKQHIAKCSKRWDVKVKQAFDEETIQPNKKKNVNQIRKNILCVLNMSTAVPFKFFTKYSCFYCSKSYVEFDDLKQHVVEAHPTCDLKEKCMKNCKGERISVKIDISSLSCRVCSESIDNVDSLIDHLITKHGAEYDKATTGCFESFKIIKDSIPCPICSTIFRYFGSLLRHINSEHSNNNRICDFCGRSFKNVANLKVHITYAHTGSCECDVCGVKYKNQWCLGRHKAKSHNAKDFQCTKCSERFQSQYHKQKHLIKVHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCTVCNEKFFDNYLLRLHMVKHKGERKFSCEVCGKAFLRRSNLSAHTEMHKKYGHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00775430; iTF_00774643;
- 90% Identity
- iTF_00775430; iTF_00774643;
- 80% Identity
- -