Haoe011635.1
Basic Information
- Insect
- Heliconius aoede
- Gene Symbol
- -
- Assembly
- GCA_037355905.1
- Location
- JBAIZZ010000305.1:1967573-1973543[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00098 0.059 14.0 0.5 2 23 11 33 10 33 0.95 2 24 0.05 3 8.6 0.5 1 23 38 61 38 61 0.92 3 24 0.024 1.5 9.6 0.8 2 23 98 119 97 119 0.95 4 24 0.0019 0.11 13.1 0.2 3 23 148 169 146 169 0.95 5 24 0.035 2.1 9.1 0.3 2 23 190 212 189 212 0.94 6 24 0.00024 0.014 15.9 2.8 2 23 218 240 217 240 0.95 7 24 0.33 20 6.1 4.3 1 23 244 267 244 267 0.96 8 24 9.2 5.5e+02 1.5 4.3 2 23 270 292 270 292 0.94 9 24 0.0016 0.097 13.3 1.8 1 23 368 391 368 391 0.93 10 24 9.5 5.7e+02 1.5 0.0 3 23 444 465 442 465 0.89 11 24 0.0014 0.081 13.6 1.2 2 23 486 508 485 508 0.95 12 24 1.6e-05 0.00097 19.6 0.5 1 23 513 535 513 535 0.97 13 24 0.005 0.3 11.8 1.2 1 23 540 563 540 563 0.96 14 24 0.0021 0.13 13.0 2.4 2 21 566 585 566 588 0.95 15 24 0.015 0.88 10.3 1.5 3 21 593 611 591 612 0.93 16 24 0.0055 0.33 11.6 0.6 1 23 663 686 663 686 0.91 17 24 1.2 75 4.2 0.1 2 23 714 736 713 736 0.95 18 24 0.00079 0.047 14.3 0.1 2 23 759 781 758 781 0.96 19 24 5e-05 0.003 18.1 0.2 3 23 788 809 787 809 0.94 20 24 0.045 2.7 8.8 3.0 2 23 814 836 813 836 0.93 21 24 0.009 0.54 11.0 4.6 1 23 841 864 841 864 0.97 22 24 5.1e-06 0.00031 21.2 5.0 1 23 868 891 868 891 0.97 23 24 0.00033 0.02 15.5 0.3 2 23 898 919 897 919 0.96 24 24 2.6e-05 0.0015 19.0 0.3 1 23 925 947 925 947 0.97
Sequence Information
- Coding Sequence
- ATGAATGAGTTTCATTCGGATAACAATATTGTTTGCGCTCAATGCGGATTAACATTTAGGGGCCACCCTAATTACCGCGCTCATATGTCCCGCTATCACAGAACTAAAGCTTGTAAATGTCCCGACTGTAACGTGGAATTTTGGAATTTGGAAAAACTTGCTCGTCACAGAGCTAATATACATgatataATACCATCAAAGAGGCCTAATACTAATACATTGAGGCGGCGAaatcttcttattttattcaacaacACATCTATAATTCCTTTTAAGTATCGAGGGAAATGTAGGTGCTTTTATTGCGGAGAGGAATTGCCCGTGTATGCTGATTTACGTAAACACACTAAAGCCCACGGTCCATGCTACGAAGACGATCGTGCTATACGATTAGTTAAAACTGATGACGCAGAAGTAAAAGttgatatatcaaatattatttgtgagaTATGCAACGAACCTTTTACTACTTGTGACGAAATAATATCGCATTTGATTACAAAACACTCATTTTCTTACGACAAAGACGTCAAACTTACAATAATGACATACCATCTCATAGATTTGCAGTGTCTTTCATGCGATCAAAAGTTTAATCAAGTCAATGAATTAGTCGcacatgttaattataaacatcCAATTCAAAGTCTAAATTGTCAAATTTGTCATGAAAAATTTATCAGAAAACCGCATTTAGATGCTCATATGAGACTAAAACATAAGGATAACTACAAATGTCTAAAATGCTCACAAATGTTTCTATCTCACTCTTCTCTTCAGGAACATAAAACTAAATCGCATGTTGCTGTTTGTAACATTTGTTTTCTGAAATTCTCTTGTCAAAAGAAAAGATTAAAGCATATGAAGTTAGAGCACGCGAATGAACACCTTAAATGTGGTTTCTGTCTTAAATCTATGAACACAAAGTTAGGATTTTTAAGACACGCCGCTAAATGTACAGAACACGGAATGAATGGAGACGATACGTACATAATAGACGATGACGATGACAAGAAACCAGCTGTAATCCAAATCAGAAATAATATTGCCTGCATACTTAACATGTCTACAGCTataccttttaaatattttatgaatagatTTAGATGTTTCTTTTGTCCTAAAGATTTCACGGATTGTGAAGAGCTTAAAGAACATACAGTAATAGAACATCCCGTTTgtgatattgattttaaatgtatgagaCTACGAAACAGGCAGGAGGGAAAACATACGAAAGCTCATGGGTTTTGTAGTACAAGTGATTATGCTTTGAAACTTATTAAAGGAGGTCATATAGAAGTTAAGATAGACGTTTCAGAGATAGCATGTGATATTTGTTACGAGCCGTTAACTAGTTTAAATGAGGTTGTAGATCATTTGACGAACAAACACGAGATGGAATACGATAAAAGTATAGATATACCTATACAGGAGTATCAGCTTTCAGATTGTCGATGTCGAATATGTGGTCaagaatttacttattttggcTACTTAATACAACATACTAATATAGCTCATCCCCAAAATACCTTCATTTGTGATAATTGTGgtgaaaaatttaacaaaaaacgaGATCTGGCCATTCATATACGCTATCACCAAGACGGTGGATATCCTTGTGACGAGTGCTCGGAATTTTTTGAGTCCTACACACTTTTAAGTAAACATAAGAACAATTTTCACTTTAGAAGATGCAAAATATGTGATTTACGCTTTCCGTCCTACACTCTTTTAAGAAgacatataaaatgtgatcATTCTGATGACAACTGTCCGTATTGctcaaaaaaatgtcaaacttCTCAAGGACTTAAACAGCACATTACGAAATGCAGTAAAAAATGTgatgtaaaagtaaaacaagCCTTCGATGAAGAAACAATGCAACCtaccaagaaaaaaaatgttaaccaaataagaaaaaatatattatgtgttctGAACATGTCTACTGCAGTACCATTTAAGTTCTTTACGAAATATACTTGCTTTTACTGTTCTAAAAGTTATGTGGAATTCGAAGACCTCAAACAACATGCAATAGCGTCGCATCCAACTTGTGAtctgaaagaaaaatgtatgaaaaattgtaaagggGAAAGGATATCGGTTAAAATAGACATATCTTCATTATCGTGTAGACTGTGCTTTGAATCGATAGATAATATAGACTCTTTAATAGACCATCTTATAACTAAGCATGGCGCTGAATACGACAAAACAACAACCGGGTGTTTCGAATCGTTCAAAATTATCAAAGATAATATTCCTTGCCCAATATGTTCTAGTGTGTTTAGATATTTCGGCTCTCTACTAAGACATATCAACTCTgaacatagtaataataacaGAATTTGTGATTTTTGCGGTCGCAGCTTCAAAAACGTGGCAAATTTAAAGGTGCATATAACTTATGCGCATACTGGTTCGTGCGAGTGTGACGTTTGCGgcgtaaagtataaaaatcaatGGTGCTTAGGTCGACACAAAGCGAAATCTCACAACGCTAAAGATTTCCAATGTACGCAGTGTTCTGAGCGGTTCCAATCACAATatcataaacaaaaacatctaATTAAAGTTCATGACATAGGTCATAAATGTTCGTACTGTGGAAAAATGTTCACGCGAAATTCTTTTATGAAAGATCACATACGTAGGACTCACTTGAAAGAGAAAAATGTGCCTTGTACAGTTTGCAATGAAAagttttttgataattatctattaagGCTTCATATGGTAAAGCATAAAGGCGAAAGGAAGTTCAGTTGTGAGATATGTGGTAAAGCGTTTTTGAGGCGCAGTAATTTGAGCGCCCACACAGatatgcataaaaaatatggccATGTTTAA
- Protein Sequence
- MNEFHSDNNIVCAQCGLTFRGHPNYRAHMSRYHRTKACKCPDCNVEFWNLEKLARHRANIHDIIPSKRPNTNTLRRRNLLILFNNTSIIPFKYRGKCRCFYCGEELPVYADLRKHTKAHGPCYEDDRAIRLVKTDDAEVKVDISNIICEICNEPFTTCDEIISHLITKHSFSYDKDVKLTIMTYHLIDLQCLSCDQKFNQVNELVAHVNYKHPIQSLNCQICHEKFIRKPHLDAHMRLKHKDNYKCLKCSQMFLSHSSLQEHKTKSHVAVCNICFLKFSCQKKRLKHMKLEHANEHLKCGFCLKSMNTKLGFLRHAAKCTEHGMNGDDTYIIDDDDDKKPAVIQIRNNIACILNMSTAIPFKYFMNRFRCFFCPKDFTDCEELKEHTVIEHPVCDIDFKCMRLRNRQEGKHTKAHGFCSTSDYALKLIKGGHIEVKIDVSEIACDICYEPLTSLNEVVDHLTNKHEMEYDKSIDIPIQEYQLSDCRCRICGQEFTYFGYLIQHTNIAHPQNTFICDNCGEKFNKKRDLAIHIRYHQDGGYPCDECSEFFESYTLLSKHKNNFHFRRCKICDLRFPSYTLLRRHIKCDHSDDNCPYCSKKCQTSQGLKQHITKCSKKCDVKVKQAFDEETMQPTKKKNVNQIRKNILCVLNMSTAVPFKFFTKYTCFYCSKSYVEFEDLKQHAIASHPTCDLKEKCMKNCKGERISVKIDISSLSCRLCFESIDNIDSLIDHLITKHGAEYDKTTTGCFESFKIIKDNIPCPICSSVFRYFGSLLRHINSEHSNNNRICDFCGRSFKNVANLKVHITYAHTGSCECDVCGVKYKNQWCLGRHKAKSHNAKDFQCTQCSERFQSQYHKQKHLIKVHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCTVCNEKFFDNYLLRLHMVKHKGERKFSCEICGKAFLRRSNLSAHTDMHKKYGHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00782808;
- 90% Identity
- iTF_00782808;
- 80% Identity
- -