Hcha013911.1
Basic Information
- Insect
- Heliconius charithonia
- Gene Symbol
- -
- Assembly
- GCA_030704555.1
- Location
- CM060824.1:664347-670720[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.0011 0.086 13.9 0.5 2 23 11 33 10 33 0.95 2 25 0.032 2.4 9.3 0.6 1 23 38 61 38 61 0.92 3 25 0.0017 0.13 13.3 2.2 1 23 66 89 66 89 0.95 4 25 5.1e-07 3.9e-05 24.4 5.7 1 23 93 116 93 116 0.97 5 25 0.0014 0.11 13.5 0.2 2 23 123 144 122 144 0.96 6 25 0.012 0.94 10.6 1.3 2 23 192 213 191 213 0.95 7 25 0.026 2 9.5 0.0 2 23 241 263 240 263 0.94 8 25 0.64 49 5.2 1.4 2 23 284 306 283 306 0.90 9 25 0.00018 0.014 16.3 1.3 2 23 312 334 311 334 0.95 10 25 0.19 14 6.9 3.0 1 23 338 361 338 361 0.96 11 25 0.00037 0.029 15.4 1.7 1 23 460 483 460 483 0.93 12 25 0.0015 0.12 13.4 1.2 2 23 578 600 577 600 0.95 13 25 3.4e-06 0.00026 21.8 0.8 1 23 605 628 605 628 0.97 14 25 0.45 34 5.7 0.8 1 23 633 656 633 656 0.95 15 25 0.0045 0.34 12.0 1.8 2 21 659 678 659 681 0.95 16 25 0.16 12 7.1 4.6 3 21 686 704 684 716 0.95 17 25 0.0056 0.43 11.7 0.5 1 22 756 777 756 779 0.90 18 25 0.82 63 4.8 0.1 2 23 807 829 806 829 0.95 19 25 0.00032 0.025 15.6 0.1 2 23 852 874 851 874 0.96 20 25 5.6e-05 0.0043 17.9 0.2 3 23 881 902 880 902 0.94 21 25 0.051 4 8.6 3.0 2 23 907 929 906 929 0.93 22 25 0.0088 0.68 11.0 5.0 1 23 934 957 934 957 0.97 23 25 5.8e-06 0.00045 21.0 5.0 1 23 961 984 961 984 0.97 24 25 0.00038 0.029 15.3 0.3 2 23 991 1012 990 1012 0.96 25 25 2e-05 0.0015 19.4 0.3 1 23 1018 1040 1018 1040 0.97
Sequence Information
- Coding Sequence
- ATGAATGAGTTTCATTCGGATAACAATATTGTTTGCGCTCAATGTGGCTTAACATTTAGGGGCCACCCTAATTACCGCGCTCATATGTCTCGTTATCATAGAACTAAAGCTTGTAAATGTCCCGACTGTAATATGGAATTTTGGAATTTAGAAAAACTTGCCCGTCACAGAGCTAATATACATGGTACAAAGAAATATAAGTGCACACAATGCGTAGAGAAATTTATTACTCAGCATCTTATGCGTAAACACCAAATTCTCGTACATGGCTTTGGACATAAATGCCCCTATTGTGGAAAAATGTTCACACGCAATTCTCATATGAAAAATCACGTAAGACGTCTTCATTTAAAGGAGAAAAATGTCGAGTGTACTGTTTGTCGTGAGAAATTCTTTGATAGAGCGCTTTTAAATGTTCACATGGTAAAACATGTGGGAGAACGAAACTATCATTGCGATGTTTGTGATATAATACCATCGAAGATGCCTAATTCTAATACATTGAGGCGGCGAAATCTTCTTATTTTATTCAACAACACATCCATAATTCCTTTTAAGTATCGAGGGAAATGTAGATGTTTTTATTGTGGAGAAGAATTGTCTGTATATGCTGATTTACGTAAACACACTAAAGCACACGGTCCGTGCTTCGAAGACGATCGTGCTTTACGATTAGTTAAAACTGATGACGCAGAAGTAAAAGTTGATATATCAAATATTGTTTGTGAAATATGCAACGAACCTTTTGCTACTTTTGAAGAAATAATATCACATTTGATTTCAAAACACTCATTTTCTTACGACAATGACGTCAAACTTACTATAATGACATACCGTCTTTTAGATTTGCAGTGTCTTTCATGTGATCAAAAGTTTGATCAAGTCAAGAAATTAGTTGCACACGTTTATCATAAACATCCAATTCAAAGTCTAGAATGTCAAATTTGTCATCAAAAATTTATCAGAAAACCATATTTAGATGCTCACATGAGACTTAAACATAAGGATAACTACAAATGTTTAAAATGCTCCCAAATGTTTCTATCCCACTCTTCTCTTGaggaacataaaattaaatcgcATGTTGCTGTTTGTAACATTTGTTTTCTGAAATTCTCTTGTCAAAAGAAAAGATTAAAGCATATGAAATTAGAGCACGCGAATGAACTGCTCAAATGTGGTTTTTGTCTTAAATCTATGAACACGAAGTTGGGATTTTTAAGACACGCCGCTAAATGTACAAAGCACGAAATTAATGGAGACGATACGTATATAATAGACGATGACAAGAAACCAGCTGTGATTcaaattagaaataatattgCCTGCATACTTAACATGTCTACAGCTataccttttaaatattttatgaatagatTTAGATGTTTCTACTGCCCTAAAGATTTCACGGATTGTGAAGAGCTTAAAGAACACACAGTAATAGAACATCCCGTttgtaatattgatttaaagTGTATGAGATTACGAAACAGACAGGAAGGGAAACATACTAAATCTCATGGTCTTTGTAGTACAAGTGATTATGCCTTGAAACTTATTAAAGGAAGTCATATAGAAGTTAAGATAGACGTTTCAGAGATAGCATGTGACATTTGTTACGAGCCATTAACTTGTTTTGATGAAGTTGTAGATCATTTGACAAATAAACACGAGTTGGAATACGATAAAAGTATAGATATACCTATACAGGAGTATCAACTTTCAGATTGTCGATGTCGGATATGTGGTCAagaatttacttattttggCTACTTAATACAACATACTAATATAGCTCATCctcaaaatacttttatttgtgATAATTGTGGTGAAAAATTCAGTAAAAAACGAGATCTGGCCATACATATGAGACGCTATCACCAAGAAGGTGGATATCCTTGCGATGAGTGTTCAGATTTTTTTGATTCCTACATACTTTTAAGTAAACATAagaataattttcactttagaAGATGCAAAATATGTGATTTACGCTTCCCATCCTACATTCTTTTAAGAAGACATATAAAATGTGATCATTCTGATGATAACTGTCCGTATTGTTCAAAAAAATGTCAAACTTCTCAAGGCCTTAAACAGCATATTACAAAGTGCAGTAAAAGATgtgatataaaagtaaaacaagCCTTCGATGAAGAAACTATACAACCTAACAAGAAAAAGAATGTTaaccaaataagaaaaaatatactgtgTGTTCTGAACATGTCTACTGCAGTACCATTTAAattctttacaaaatattcttGCTTTTACTGTTCTAAAAGTTACGTAGAATTTGATGACCTCAAACAACATGTAGTAGAGGCGCATCCAACTTGTGATCTGaaagaaaaatgtatgaaaaattgtAAAGGTGAAAGGATATCGGTTAAAATCGACATATCATCATTATCGTGTAGAGTGTGCTTTGAATCCATAGACAATGTAGATTCTTTAATAGATCATCTTATAACTAAGCATGGAGCTGAATACGATAAAGCAACAACCGGATGTTTTGaatcgtttaaaataataaaagatagtaTTCCTTGCCCAATATGTTCtactatttttagatatttcggATCCCTTCTAAGGCATATCAATTCTGAACATAGTAATAATAACAGAATTTGTGATTTTTGCGGCCGTAGCTTCAAAAACGTGGCCAATTTAAAGGTGCATATAACTTATGCGCATACTGGTTCGTGCGAGTGTGACGTTTGCGGCGTAAAGTATAAAAATCAATGGTGCTTAGGTCGACACAAAGCGAAATCTCACAACGCTAAAGATTTCCAATGTACGAAGTGTTCAGAGCGGTTCCAATCACAATatcataaacaaaaacatttaattaaagtcCATGACATAGGTCATAAATGTTCATACTGTGGGAAAATGTTTACGCGAAATTCTTTTATGAAAGACCACATACGTAGGACTCACTTAAAAGAGAAAAATGTGCCCTGTACAGTTTGCAATGAAAAGTTTTTTGATAATTATCTATTAAGACTTCATATGGTAAAGCATAAAGGCGAAAGAAAATTCAGTTGTGAGATATGTGGTAAAGCGTTTTTGAGGCGCAGTAATTTGAGCGCTCACACagaaatgcataaaaaatacGGCCATGTTTAA
- Protein Sequence
- MNEFHSDNNIVCAQCGLTFRGHPNYRAHMSRYHRTKACKCPDCNMEFWNLEKLARHRANIHGTKKYKCTQCVEKFITQHLMRKHQILVHGFGHKCPYCGKMFTRNSHMKNHVRRLHLKEKNVECTVCREKFFDRALLNVHMVKHVGERNYHCDVCDIIPSKMPNSNTLRRRNLLILFNNTSIIPFKYRGKCRCFYCGEELSVYADLRKHTKAHGPCFEDDRALRLVKTDDAEVKVDISNIVCEICNEPFATFEEIISHLISKHSFSYDNDVKLTIMTYRLLDLQCLSCDQKFDQVKKLVAHVYHKHPIQSLECQICHQKFIRKPYLDAHMRLKHKDNYKCLKCSQMFLSHSSLEEHKIKSHVAVCNICFLKFSCQKKRLKHMKLEHANELLKCGFCLKSMNTKLGFLRHAAKCTKHEINGDDTYIIDDDKKPAVIQIRNNIACILNMSTAIPFKYFMNRFRCFYCPKDFTDCEELKEHTVIEHPVCNIDLKCMRLRNRQEGKHTKSHGLCSTSDYALKLIKGSHIEVKIDVSEIACDICYEPLTCFDEVVDHLTNKHELEYDKSIDIPIQEYQLSDCRCRICGQEFTYFGYLIQHTNIAHPQNTFICDNCGEKFSKKRDLAIHMRRYHQEGGYPCDECSDFFDSYILLSKHKNNFHFRRCKICDLRFPSYILLRRHIKCDHSDDNCPYCSKKCQTSQGLKQHITKCSKRCDIKVKQAFDEETIQPNKKKNVNQIRKNILCVLNMSTAVPFKFFTKYSCFYCSKSYVEFDDLKQHVVEAHPTCDLKEKCMKNCKGERISVKIDISSLSCRVCFESIDNVDSLIDHLITKHGAEYDKATTGCFESFKIIKDSIPCPICSTIFRYFGSLLRHINSEHSNNNRICDFCGRSFKNVANLKVHITYAHTGSCECDVCGVKYKNQWCLGRHKAKSHNAKDFQCTKCSERFQSQYHKQKHLIKVHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCTVCNEKFFDNYLLRLHMVKHKGERKFSCEICGKAFLRRSNLSAHTEMHKKYGHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00782808;
- 90% Identity
- iTF_00782808;
- 80% Identity
- -