Basic Information

Insect: Heliconius sara
Gene Symbol: -
Assembly: GCA_917862395.2
Location: OU860796.2:17848874-17852951[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.048 3.5 8.7 0.2 1 23 19 42 19 42 0.94

2 26 0.0019 0.14 13.1 1.2 1 23 49 72 49 72 0.98

3 26 2.8e-05 0.0021 18.8 0.6 1 23 79 101 79 101 0.97

4 26 3.2e-06 0.00024 21.8 3.0 1 23 107 129 107 129 0.98

5 26 9.4e-05 0.007 17.2 0.6 2 23 133 155 132 155 0.96

6 26 0.0021 0.16 12.9 0.4 1 23 233 256 233 256 0.97

7 26 1 76 4.5 0.2 2 23 283 305 282 305 0.94

8 26 0.0033 0.24 12.3 1.7 1 23 327 349 327 349 0.98

9 26 2.7e-05 0.002 18.9 0.9 1 23 353 375 353 375 0.98

10 26 0.0006 0.044 14.7 0.2 1 21 409 429 409 432 0.90

11 26 5.4 4e+02 2.2 2.0 1 13 439 451 439 453 0.89

12 26 3 2.2e+02 3.0 0.4 1 19 499 517 499 521 0.86

13 26 0.031 2.3 9.2 1.5 2 23 546 568 545 568 0.91

14 26 0.0067 0.49 11.4 1.6 1 23 590 612 590 612 0.98

15 26 7.7e-05 0.0057 17.4 1.1 1 23 616 638 616 638 0.98

16 26 0.2 15 6.7 1.1 1 23 672 695 672 695 0.92

17 26 0.0015 0.11 13.4 1.5 1 23 743 765 743 765 0.97

18 26 1.6 1.2e+02 3.9 0.2 2 23 789 811 788 811 0.89

19 26 0.89 66 4.7 3.0 3 23 835 855 834 855 0.97

20 26 3.3e-05 0.0024 18.6 1.4 3 23 861 881 860 881 0.97

21 26 0.048 3.6 8.7 2.8 1 23 888 911 888 911 0.98

22 26 0.0003 0.022 15.6 2.8 1 23 917 940 917 940 0.97

23 26 0.0017 0.13 13.2 0.7 1 23 946 969 946 969 0.97

24 26 0.00053 0.04 14.8 0.5 1 23 975 997 975 997 0.97

25 26 5.3e-07 3.9e-05 24.3 1.0 1 23 1003 1025 1003 1025 0.99

26 26 7e-05 0.0052 17.6 4.8 1 23 1031 1053 1031 1054 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.048	3.5	8.7	0.2	1	23	19	42	19	42	0.94
2	26	0.0019	0.14	13.1	1.2	1	23	49	72	49	72	0.98
3	26	2.8e-05	0.0021	18.8	0.6	1	23	79	101	79	101	0.97
4	26	3.2e-06	0.00024	21.8	3.0	1	23	107	129	107	129	0.98
5	26	9.4e-05	0.007	17.2	0.6	2	23	133	155	132	155	0.96
6	26	0.0021	0.16	12.9	0.4	1	23	233	256	233	256	0.97
7	26	1	76	4.5	0.2	2	23	283	305	282	305	0.94
8	26	0.0033	0.24	12.3	1.7	1	23	327	349	327	349	0.98
9	26	2.7e-05	0.002	18.9	0.9	1	23	353	375	353	375	0.98
10	26	0.0006	0.044	14.7	0.2	1	21	409	429	409	432	0.90
11	26	5.4	4e+02	2.2	2.0	1	13	439	451	439	453	0.89
12	26	3	2.2e+02	3.0	0.4	1	19	499	517	499	521	0.86
13	26	0.031	2.3	9.2	1.5	2	23	546	568	545	568	0.91
14	26	0.0067	0.49	11.4	1.6	1	23	590	612	590	612	0.98
15	26	7.7e-05	0.0057	17.4	1.1	1	23	616	638	616	638	0.98
16	26	0.2	15	6.7	1.1	1	23	672	695	672	695	0.92
17	26	0.0015	0.11	13.4	1.5	1	23	743	765	743	765	0.97
18	26	1.6	1.2e+02	3.9	0.2	2	23	789	811	788	811	0.89
19	26	0.89	66	4.7	3.0	3	23	835	855	834	855	0.97
20	26	3.3e-05	0.0024	18.6	1.4	3	23	861	881	860	881	0.97
21	26	0.048	3.6	8.7	2.8	1	23	888	911	888	911	0.98
22	26	0.0003	0.022	15.6	2.8	1	23	917	940	917	940	0.97
23	26	0.0017	0.13	13.2	0.7	1	23	946	969	946	969	0.97
24	26	0.00053	0.04	14.8	0.5	1	23	975	997	975	997	0.97
25	26	5.3e-07	3.9e-05	24.3	1.0	1	23	1003	1025	1003	1025	0.99
26	26	7e-05	0.0052	17.6	4.8	1	23	1031	1053	1031	1054	0.96

Sequence Information

Coding Sequence: ATGCGTGCAGCTAGAGATTATCATAAAGCTCATGCTCATGCTAAGGGGCCTCGTTACGAATGTCCACAATGTAATATGAGGTTTGGAGGCTACTATGAAAGAATGAATCATTTGAATGAGGCTCATAGAGAAAAGGAAGTTTCTTACAAGTGTGCTCATTGTGAGCTATCTTTTAAAACTAGCGGAAAACGTGCAATTCATGTTAGATCCGTTCATTTTCCACAGCAACGCAACTTTGCTTGTCCTTTTTGTAAATGGCTTTTTAAAACTGCTTATGAATTAAAAAGACATATGGTGAGGCATACGGGAGAAAGAAATTTCTGTTGTACTATATGTGGAAAAACGTTTCCAAGAAATAGAGCATTAAGAGCTCATTTCAAAACGCATGAAGACCTTAGTTGTAAATGGTGTGGAGTGATTTTCAAACAAAAGACACTTTTATTGACTCATCTGCGATCCAATCATCCGGAAATAAgtTCCGCTATTGCGGATTATGAAGAGTTAGTAGTAGGAGTTAAACGCATTAGAAAGTTAAAGGAGAACGTCTGTGCGAGGCAAATGCGTCGTCGACGGCGCGCCAACAACGAGCTACCAGAAGAATCTGAGAAAAGAATATCTAAAACAATGATGCGTAGAAATGCCATGACGCTTCTCGAATATTCAACTGCCTGGGCCTTCCGTTGGTTTCAAAGCGCTTTTTTTTGTTCCTATTGCGATGCTAAATACGTTGATCCGTTACTTTTACGTAACCATGTTCAGACCTTTCATATTGCCGATGCTCCAACGAAACGAATATTCTCAAAACTCACTGAAAACAACATggttaaaatagatattttaagtttGCGTTGTAGGCTGTGTGATTTTGAAATAAGGAGTTTGGAATTaatgaaaaatcatttaatttctgGACATGAGAAAATATTTCACCTAAACTATAACGATGGTGTTTTACCATTTATTCTTGAACCTAATAGATTTGAATGCCAAATGTGTGATGCGGCATTCTCGAGTTTTTGTAAGATTAACGAACATATGAACactcattataaaaattacatttgcgACACATGTGGTAAAGCGTTTATTTCAAAATCAAGGTTTAGAACTCACGTCCAATCACATGAGATTGGTAATTTTCCTTGCGGAGAATGTGAAGAAATTTTGGAAACGAGAGCTGCCAGAATGTGCCATAGATTAAGAATACACAAAAAAGGAGTACGGTACACATGTCCATATTGTCCAGAAGTATTTACTACTTATTACGCAAGAGCAAAACATTTAGTGGATGGACATaatcaagaaaagaaaaattatgagTGTTCATCTTGTGgaaaattatttgaaactaGTTgcACAGAAGCCACAGGGACAACAAAAAATTCAATAGCGATTGAGTGGAGAAAGAAACGCCCATTTTTAGAGAACAAGGCTAATTCGGCCGTAATACTAGATTGCTCAAATGCTATAGTATTTCGATGGTCGCGTGGTAAATTTCTTTGTGCCTACTGTCCAGAAATATTCCAAAACGTAGCAGAAATACGTAAGCATTGCGATATACATGAAAAGCTTACAGTACTACAGAAACCAGAAGTACACAATTCATTCCcactaaaaatagatataacagATTTAAAGTGCACCCTGTGTAATAATAGTTTCAAAAAATTTACAGATTTCAAAGTTCATTTAGTTAATGTTCACAGTAAAGTATTTGACTCAAACTACGACGACGGTGTTATTCCGTTCATACTTACGGGCTCGGAGTACCGATGTGTCATTTGTCACAACTTGTTTGAAAGTTACGTGAATTTATTTAGTCATATGAATGAGCATTATCAAAGTTTTGTATGCTACACGTGTGGTAAAGGATACTCGGCTAAATATAAACTGCGAGCACATCAGAAAAGTCACGAGACCGGTAAAGTGCCATGTTCAAGATGTgacttagtatttttaaatcatgTTATAAAAAACCGGCACGTGGCTACAGTGCATGGATCTAAGAAAAGGTATCGTTGTCCAATTTGCGCTATGGCCTTCGAATCTTGCCATTCGAGATTGATACATCTTGGGAAAGTACATGGACAAAAAAGCGAATATCGATGGACATTCacaaagtttatatggaaacgTGGACGAAGGCTTTACAATGATCACAGAGATAACGCCGCAACTATTATACAATTCTCAAATGTTTGTCCTTTTCGCTGGAAACGCGGAGCTTTCGCTTGTTCTCATTGTCCGAGAACTTTTGGCAACTTTAAAGACGTTAGTAATCATATGCAGGAGCATCCTAATCGCCTTGAGGCAATGCGATATGCTCGTCCTTATGATAATGTAAAAGTGGAAATAAGTAACCTTCAATGTGgaatttgtaatgaaaatatgaatggcTTAGAACATCTTAAAGACCATTTGTTTGAAGGTCACCAAAAATCAATCACCAAAGACCTTAGTCTTGGTGTAAccccttttattttaaaagaaaaagaaatgctTTGTACTCATTGTGATGAACGTTTTCTCTTGTTTTCAAGACTGAACAGTCACATGAACCAACACTATCCAAATAATATCTGTCCTCACTGCGGTAAATCTTTCTCCGCCGCTCATCGCCTTAAGGCCCACCAGCTAATACATGAAACTAATAACCAAGAGCATAAATGTGCCAAATGTGGTGATATATTCGAGACGCgatctttaaaaaattatcacATGAACACTAAACATGCAACAGAAAATCGATACAGATGTCCCTATTGTAGAATATCGTTTAAGCGCTACTCAGATAGAGTTCGTCACCTAAAGCAGTTTCATAATCAAAGCGTAGATTATCCATGTCATTTATGTACAGCAGTTTTCGCTATGTCCGACCAAAGAACCAAACATATAAGAAACGTTCATATTAAACACAAACAATTTCAGTGTGATTTCTGCCCAAGTAAGTTTGTCACTGCCGGTCAGTTGAAGAGTCACTTAGTAAAACACAGTGGTGTCAAGGAATATCAATGCAACGTGTGCAAGAAGAGTTACGCGAGAGCTAGAACTTTGAAAGAACATATGAGAATACACAATAATGATAGGAGATTCGTTTGCGAATACTGTAATAATGCGTTTATTCAAAAATGTAGTCTTAAAAGTCATATTCGAACACATCACCCGAATGCGGAACCAGTGAAAATTTCagtatag
Protein Sequence: MRAARDYHKAHAHAKGPRYECPQCNMRFGGYYERMNHLNEAHREKEVSYKCAHCELSFKTSGKRAIHVRSVHFPQQRNFACPFCKWLFKTAYELKRHMVRHTGERNFCCTICGKTFPRNRALRAHFKTHEDLSCKWCGVIFKQKTLLLTHLRSNHPEISSAIADYEELVVGVKRIRKLKENVCARQMRRRRRANNELPEESEKRISKTMMRRNAMTLLEYSTAWAFRWFQSAFFCSYCDAKYVDPLLLRNHVQTFHIADAPTKRIFSKLTENNMVKIDILSLRCRLCDFEIRSLELMKNHLISGHEKIFHLNYNDGVLPFILEPNRFECQMCDAAFSSFCKINEHMNTHYKNYICDTCGKAFISKSRFRTHVQSHEIGNFPCGECEEILETRAARMCHRLRIHKKGVRYTCPYCPEVFTTYYARAKHLVDGHNQEKKNYECSSCGKLFETSCTEATGTTKNSIAIEWRKKRPFLENKANSAVILDCSNAIVFRWSRGKFLCAYCPEIFQNVAEIRKHCDIHEKLTVLQKPEVHNSFPLKIDITDLKCTLCNNSFKKFTDFKVHLVNVHSKVFDSNYDDGVIPFILTGSEYRCVICHNLFESYVNLFSHMNEHYQSFVCYTCGKGYSAKYKLRAHQKSHETGKVPCSRCDLVFLNHVIKNRHVATVHGSKKRYRCPICAMAFESCHSRLIHLGKVHGQKSEYRWTFTKFIWKRGRRLYNDHRDNAATIIQFSNVCPFRWKRGAFACSHCPRTFGNFKDVSNHMQEHPNRLEAMRYARPYDNVKVEISNLQCGICNENMNGLEHLKDHLFEGHQKSITKDLSLGVTPFILKEKEMLCTHCDERFLLFSRLNSHMNQHYPNNICPHCGKSFSAAHRLKAHQLIHETNNQEHKCAKCGDIFETRSLKNYHMNTKHATENRYRCPYCRISFKRYSDRVRHLKQFHNQSVDYPCHLCTAVFAMSDQRTKHIRNVHIKHKQFQCDFCPSKFVTAGQLKSHLVKHSGVKEYQCNVCKKSYARARTLKEHMRIHNNDRRFVCEYCNNAFIQKCSLKSHIRTHHPNAEPVKISV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00160039;
90% Identity: iTF_00775429;
80% Identity: -