Hmel000185.1
Basic Information
- Insect
- Heliconius melpomene
- Gene Symbol
- -
- Assembly
- None
- Location
- Hmel214004o:6667992-6669996[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.28 2.7e+03 -1.3 0.1 19 44 112 134 108 138 0.58 2 5 0.00025 2.4 8.5 0.0 21 52 139 170 130 172 0.87 3 5 0.0069 67 3.8 0.0 21 43 167 189 163 194 0.87 4 5 0.46 4.5e+03 -2.0 0.1 24 43 198 217 188 225 0.56 5 5 1e-06 0.0097 16.1 0.0 22 48 252 278 248 282 0.93
Sequence Information
- Coding Sequence
- ATGTCTTTAGCAAAAGTTCAAATACAACCAAATGACGGGCTGCCTACCTTAATATGTACACATTGTGAGGAAACCTTAGATATTTGTTTACAGTTTATAAAACTTTGTGAAAAATCGGATTATGAATTAAGAAATTCTATAATCGTTATTAAAGAAGAAAATCTCGCAACTGATCTAAGCATGCACGAAGCAACAAGATGTTACACTACAATAGATGGTCCTCCTGTTATTAAAAATTACAATAAAGACAACATAAAAACTGAAGTTAATGAAGCAATGAATTCTATTTATACTTTAAAAGATGCAGATAACTTAAAAATTAATAATAAAGCATCTCAAAAGCAACAATGTTTTACATGTGGTAAAGTTATGTCTTCCAGGTTTCGTCTCAAAACTCACTTAGCAACCCATGCCGCAGAGAAACCTTTTACTTGTCCACATTGTGAAAAGAAATTTTCTATAGCACAGAATCTGACTGTTCACATAAGAATACATACAGGAGAAAAACCTTTTGTTTGTAAAATATGTGGGAAATCATTTGCCCAATCCTCTGGACTGACCACTCATAAACGAAAGCACACAGGTCAGATGCCATACCAGTGTGTGCTTTGTCCGAGAAGCTTTCGTACTATAGGTCATCTACAGTATCATGTAAGACGTCATACGGGTGAAAAAAAATACGAATGCGACAAGTGTAGTCGCGCATTTATTACTCGAAGTGATTTAAAACAACACATTTTGACGCATATTGGAGAAAAACCGCATGTCTGCTCCATTTGTGGTATAAAATTATCCCGAGCATCAAACCTAAAACGCCATTTAAAATTGTCTCATAGCGAAGGAAAATCCTTCATCTGCACTGAATGTCCATCAAAATTTGCTCGCAAAAGTGATCTTTTAAAACATGAAAAGAAACATACCAGCAATGTAAATAAAGAAATTAATAATAAATAA
- Protein Sequence
- MSLAKVQIQPNDGLPTLICTHCEETLDICLQFIKLCEKSDYELRNSIIVIKEENLATDLSMHEATRCYTTIDGPPVIKNYNKDNIKTEVNEAMNSIYTLKDADNLKINNKASQKQQCFTCGKVMSSRFRLKTHLATHAAEKPFTCPHCEKKFSIAQNLTVHIRIHTGEKPFVCKICGKSFAQSSGLTTHKRKHTGQMPYQCVLCPRSFRTIGHLQYHVRRHTGEKKYECDKCSRAFITRSDLKQHILTHIGEKPHVCSICGIKLSRASNLKRHLKLSHSEGKSFICTECPSKFARKSDLLKHEKKHTSNVNKEINNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00774930;
- 90% Identity
- iTF_00778191;
- 80% Identity
- iTF_00780446;