Haoe009627.1
Basic Information
- Insect
- Heliconius aoede
- Gene Symbol
- -
- Assembly
- GCA_037355905.1
- Location
- JBAIZZ010000243.1:439539-441581[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.058 1.2e+03 -0.1 0.1 17 44 135 162 129 166 0.71 2 4 0.00016 3.2 8.1 0.1 21 52 167 198 163 200 0.85 3 4 0.0036 72 3.8 0.0 21 43 195 217 193 223 0.88 4 4 1.5e-06 0.03 14.6 0.0 21 48 279 306 276 309 0.92
Sequence Information
- Coding Sequence
- atgaataaatgtaGAATTTGTTTAAGTAGagttaatttaacaataaacatatttaataattccacATCTGAACagatatatactaaaataatgtcTTTAGCTAAAGTTcaaatACAACCAAACGACGGGCTGCCTACcttaatatgtacaaattgTAAGAAAACCTTAGacatttgtttacaatttataaaactttgtgAAAAATCAGATTATGAATTAAGAAATTCTGTAATCGtaattaaagaagaaaatcTCGCAACGGATCTAAGCATGCACGAAACAACAAGatgttttaatacaatagATGATCCTCCTGtttgtgaaaattataatcaagataaaacaaaaactgaaGTTAATGATGCAATAAATTGTGCTTTAAAAGATACAgacaatttaaatagtaataataaagcaTCTCAAAAGCAACAATGTTTTACATGTGGTAAAGTTATGTCTTCCagGTTTCGTCTCAAAACTCACTTGGCAACCCATGCGGAAGAGAAACCATTTACTTGTCcacattgtaataaaaaattttcaatagcaCAGAATCTAAATGTTCACATAAGAATACatacaggagaaaaaccttttatttgtaaaatatgtggGAAAACTTTTGCTCAATCCTCTGGACTGACCACTCATAAAAGAAAGCACACTGGCCAGATGCCGTACCAATGTGTGCTTTGTCCAAGAAGGTTTCGTACTATAGGTCACCTACAGTATCATGTAAAacGTCATActggtgaaaaaaaatacgagtGTGACAAGTGCAGTCGCGCCTTTATTACACGAAGTGATttaaaacaacatattttgACACATAATGGAGAAAAACCGCATGTCTGCTCTATTTGTGGTATAAAACTATCCAGAGCATCAAACCTAAAAcgccatataaaattatctcatAGTGAAGGTAAAACTTTGATCTGCACTGAATGCCCATCAAAGTTTGCTCGTAAAAGTGATCTTTTAAAACATGAAAAGAAACATACAAACAATGTTAATAaagacattaataataaataa
- Protein Sequence
- MNKCRICLSRVNLTINIFNNSTSEQIYTKIMSLAKVQIQPNDGLPTLICTNCKKTLDICLQFIKLCEKSDYELRNSVIVIKEENLATDLSMHETTRCFNTIDDPPVCENYNQDKTKTEVNDAINCALKDTDNLNSNNKASQKQQCFTCGKVMSSRFRLKTHLATHAEEKPFTCPHCNKKFSIAQNLNVHIRIHTGEKPFICKICGKTFAQSSGLTTHKRKHTGQMPYQCVLCPRRFRTIGHLQYHVKRHTGEKKYECDKCSRAFITRSDLKQHILTHNGEKPHVCSICGIKLSRASNLKRHIKLSHSEGKTLICTECPSKFARKSDLLKHEKKHTNNVNKDINNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00774692; iTF_00779682; iTF_00781221; iTF_00782025; iTF_00780446; iTF_00780703; iTF_00778191; iTF_00778937; iTF_00458253; iTF_00457423; iTF_00775466; iTF_01182074;
- 90% Identity
- iTF_00774692;
- 80% Identity
- iTF_00774692;