Basic Information

Insect: Heliconius hermathena
Gene Symbol: -
Assembly: GCA_013403705.1
Location: JAAIXJ010000109.1:722116-729428[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.1e-06 0.00022 21.7 1.7 1 23 272 294 272 294 0.98

2 9 2.9e-08 2.1e-06 28.0 1.6 3 23 302 322 300 322 0.98

3 9 0.0001 0.007 16.9 0.3 1 23 328 350 328 350 0.98

4 9 1.1e-05 0.00075 20.0 1.7 1 23 356 378 356 378 0.99

5 9 2.2e-05 0.0016 19.0 1.7 2 23 555 576 554 576 0.96

6 9 2.8e-09 2e-07 31.2 1.6 1 23 582 604 582 604 0.98

7 9 0.0024 0.17 12.6 0.6 3 23 612 632 610 632 0.97

8 9 6.2e-05 0.0044 17.6 1.5 1 23 638 660 638 660 0.99

9 9 0.019 1.3 9.8 0.8 1 23 666 690 666 690 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.1e-06	0.00022	21.7	1.7	1	23	272	294	272	294	0.98
2	9	2.9e-08	2.1e-06	28.0	1.6	3	23	302	322	300	322	0.98
3	9	0.0001	0.007	16.9	0.3	1	23	328	350	328	350	0.98
4	9	1.1e-05	0.00075	20.0	1.7	1	23	356	378	356	378	0.99
5	9	2.2e-05	0.0016	19.0	1.7	2	23	555	576	554	576	0.96
6	9	2.8e-09	2e-07	31.2	1.6	1	23	582	604	582	604	0.98
7	9	0.0024	0.17	12.6	0.6	3	23	612	632	610	632	0.97
8	9	6.2e-05	0.0044	17.6	1.5	1	23	638	660	638	660	0.99
9	9	0.019	1.3	9.8	0.8	1	23	666	690	666	690	0.95

Sequence Information

Coding Sequence: ATGTCAACTAATTTTAATAGCCTTGATTTTTTCCTCCGTCTCATGTTTACTCTCGTTTATTCGCCACGATCTCAGGGCTGCGTGCGAAGTGCATTGCCCTGTACCGAAATAAATTGTCGCGACGCAGTGTCGTGCCGCGTGCGTACAACCGGTACCGATGTATCGGATAAGGAATTAGGGACATCTCATAAAGACGCTGACACGACAGCGCCGTACGTGCTATATAAAGATGGAGTGGAGCGCGCTCCGCCTGGCACGCAATGGGGTGGCGCAGTGTTGGACGGAGGCTACCAGGCCATGCAGCACCAGAGCCCTGGCGGGCCCTCCCCACAGCCGGAGCCCCAGCTCGCCTCCCCCGCCCCGTCCCCGTACCCGCCTGCCCCGCCCCCTCCCGATCAATCTGCAGACGAGGCCGCTCAGCAGCTCGCGCAGCAACAAGCGCAACAACAGGCGCAGCAACAACAAGCGCAACAACAACAAACTTCTCCCGAACACTTGCAAGTGGACCAGCAGCTCCAAAACCAAACACAACCTCCAACACAAGATCATCTCGACAGAACTCCATGCTTTGTTCCGCAACCGGACTTACAACAACAATACGCAACTCCTTACTTTAAAGAAACAAGACCAGCGAGTCACATGCTAGGAACGGGTGGCTTTCCACTGcattatttgaaacaaaacGGTGGTGTGCTATCACTAGAAGGTCCATTGGACCAGTATGCGACACCAGACTTGCGTCACTTACCAGACATAGTGCAAGCTGAGCCTCCCAAGCCTCGGAAACACAACCCGAACTCAGAACTGCGCTTGTTCAAATGCCTGACCTGTGGCAAAGACTTCAAGCAGAAATCAACGTTACTCCAGCACGAGCGGATCCACACGGACTCGCGGCCATACGGGTGTCCGGAGTGCGGCAAGCGGTTCCGCCAGCAGTCCCATCTGACGCAGCACCTGCGCATCCACGCGAACGAGAAACCGTACGCGTGTGTGTACTGCCCGCGGTCGTTCCGGCAGCGCGCCATCCTCAACCAGCACCTCCGCATCCATTCCGGTGAGAAGCCATATACGTGCGGCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGGCGAGCGCTATTCACAACTATATGCCCCGCCCCGGTCCCCGCGCGCGGCGCCAGCGCTGGTCATACACAGTAACGGCGCCGCGCGCGCCTCCACCCGCCCCCCACACGTTCGGTTCGCATCCATTGGCCTTCCTATCAAACAAATTCTCGGTCCCCTCGTCGCCCACTTAGCGATGGGTGTTCGCGAGAACCGATCGCCGGACGCTCCCGTAACCGTCCTAAACGTATCTCCGCATCTTATCTTCAAGAACGGGACAACGCCTACACTGTGGCCGCAAGATGTTCCGTTTCCACCGGATGAGAATAAAGAAGAGGTGCAGTCTACCTTCGGCGACACCGATGGGCAGAACGGCGAGCAGCGAGGATCATGTTTTTCACCGGGCGATACCGCACAATACCCAGCCTACTTCAAAGATACGAAAGGTCTCAACCACGCCGTCTTTGGTTCAGGGCTGTCACTTCAGTACATTAAAGGAGGAAAATTACCCGATGTGCTCGGTGGTCGTGCAATGCCTTTGTACGTTCGTTGCCCCATCTGCCAAAAAGAATTCAAGCAGAAGTCAACACTTTTACAACATGGCTGCATACACATAGAGTCGCGGCCGTATCCTTGTCCGGAGTGCGGCAAGCGTTTCCGCCAGCAGTCACACTTAACCCAGCACTTACGCATTCACACAAACGAAAAGCCATACGGATGCGTATATTGCCCTCGATTTTTCCGGCAACGGACGATACTCAACCAGCACCTGCGCATCCACACGGGCGAGAAGCCGTACAAGTGCACGCAGTGCGGTAAGGACTTCCGGCAGAAGGCCATCCTCGACCAGCACACGCGCACGCACCAGGGCGACCGGCCCTTCTGCTGCCCCATGCCCAACTGCCGGCGCCGCTTCGCCACCGAGCCCGAGGTGAAGAAGCACATCGACAACCACATGAACCCGCACGCCGCCAAGACGCGGCGCGACTCCAAGACGCCGCGGCCGCTGCCGCCCGCCGCCGTGGTGAAGCCCGAGCTGTACTTCCCGCAGTGCTACGCGCCGCCCTTCCAGCAGTTCGCGGCGCCGGCGGAGTTCAAGCCGGCGGTGGGCGGCGGCGTGGCGTGCCTGCCGGCGCAGTGA
Protein Sequence: MSTNFNSLDFFLRLMFTLVYSPRSQGCVRSALPCTEINCRDAVSCRVRTTGTDVSDKELGTSHKDADTTAPYVLYKDGVERAPPGTQWGGAVLDGGYQAMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDQSADEAAQQLAQQQAQQQAQQQQAQQQQTSPEHLQVDQQLQNQTQPPTQDHLDRTPCFVPQPDLQQQYATPYFKETRPASHMLGTGGFPLHYLKQNGGVLSLEGPLDQYATPDLRHLPDIVQAEPPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQGERYSQLYAPPRSPRAAPALVIHSNGAARASTRPPHVRFASIGLPIKQILGPLVAHLAMGVRENRSPDAPVTVLNVSPHLIFKNGTTPTLWPQDVPFPPDENKEEVQSTFGDTDGQNGEQRGSCFSPGDTAQYPAYFKDTKGLNHAVFGSGLSLQYIKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKTRRDSKTPRPLPPAAVVKPELYFPQCYAPPFQQFAAPAEFKPAVGGGVACLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00358842;
90% Identity: iTF_00673685;
80% Identity: iTF_00778909;