Hcha003767.1
Basic Information
- Insect
- Heliconius charithonia
- Gene Symbol
- Mbd2
- Assembly
- GCA_030704555.1
- Location
- CM060812.1:4186203-4189274[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-28 2.2e-24 85.4 0.1 1 72 5 71 5 76 0.93 2 2 0.00074 1.8 8.8 0.0 29 74 93 146 77 149 0.87
Sequence Information
- Coding Sequence
- atgaatatctCTATAGAAAAGAAAAGATCGGATTGTTCTGCATTGCCAAAAGGTTGGCAAAGAgaagaaataataagaaaatctgGATTGTCTGCAGGCAAAGTTGATGTTTATTACTATAGCCCAACAGGTAAAAAGTTTCGCAGTAAACCCGAGCTAGTGCGTTATCTTGGTGATAGTGTGGACTTGTCGTGTTTTGACTATCAACAAGGTCAAATTAACACAATGCTCCTGTGCAAGGCCAAGAAAGCTCGAGCTCAATTTGATTACAGGGGTGTTCGTTCAGACACTTCACTTGTGCCCCCAATACGTCAAACTGCCTCTATATTTAAGCAACCAGTCACTGTTTACAAGACTCaagaaagtaaagtaaaaactgACCTCAAACAAGGCACACAAGAAAAGCCGAAACAGCTATTTTGGGAAAAACGTCTAGAAGGATTGACCGCTTGTGATTCTAATGGAGTAGTTGGTACAACATCTCTACCAAAATACATTAAACCTCTGGGACCATATACTTCAGACGCTACAACAATACAGTCCTTAGCTACAGCTTTACATGTTTCATCCCAACCCATAACAGGTCAAACCGGatcaaaacaaacaataatagaGAGCCCGGGAGTTTTTTTAAACCCGGACCAGCCATTGATAGCTGCGGTGACCATAACAAAGGATGACCTGCGTCGGCAAGAGGAGCGTGTGAAGCGCGCGCGTTTGAGGCTCCATGAGGCCCTAGCGGCTGCATAG
- Protein Sequence
- MNISIEKKRSDCSALPKGWQREEIIRKSGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFDYQQGQINTMLLCKAKKARAQFDYRGVRSDTSLVPPIRQTASIFKQPVTVYKTQESKVKTDLKQGTQEKPKQLFWEKRLEGLTACDSNGVVGTTSLPKYIKPLGPYTSDATTIQSLATALHVSSQPITGQTGSKQTIIESPGVFLNPDQPLIAAVTITKDDLRRQEERVKRARLRLHEALAAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090793;
- 90% Identity
- iTF_00774506;
- 80% Identity
- iTF_00778025; iTF_00777390; iTF_00779519;