Haoe002269.1
Basic Information
- Insect
- Heliconius aoede
- Gene Symbol
- Mbd2
- Assembly
- GCA_037355905.1
- Location
- JBAIZZ010000052.1:481507-484966[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-27 2.4e-24 84.9 0.1 1 72 5 71 5 76 0.93 2 2 0.00071 1.4 8.7 0.0 29 74 93 146 77 149 0.87
Sequence Information
- Coding Sequence
- atgaatatctctatagaaaagaaaaaatcagaTTGTTCTGCATTGCCAAAAGGTTGGCAAagagaagaaataataagaaaatctgGATTGTCTGCAGGCAAAGTTGATGTTTATTACTAtagcCCAACAGGTAAAAAGTTTCGCAGTAAACCCGAGCTAGTGCGTTATCTTGGTGATAGTGTGGACTTATCGTGTTTTGACTATCAACAAGGTCAAATTAACACAATGCTCCTGTGCAAGGCCAAGAAAGCTCGAGCTCAATTTGATTACAGGGGTGTTCGTTCAGACACTTCACTTGTGCCCCCGATACGACAAACTGCCTCTATATTTAAGCAACCAGTCACTGTTTACAAGACTCAAGAAAGTAAAGTGAAAACTGACCTCAAACAAGGCACACAAGAAAAGCCGAAACAACTCTTTTGGGAAAAACGTctagaagGACTGACTGCTTGTGATTCTAATGGTGTAGTGGGAACAACATCTCTACCTAAATATATCAAACCTCTGGGACCGTATACTTCAGACGCTACAACAATACAGTCCTTAGCTACAGCTTTACATGTTTCATCACAACCCATAACAGGTCAAACCGGatcaaaacaaacaataatggAGAGTCCAGGAGTTTTTCTAAATCCGGACCAGCCATTAATAGCTGCAGTGACCATAACAAAAGACGACCTGCGTCGGCAAGAGGATCGTGTGAAGCGCGCGCGCTTGAGGCTCCATGAGGCTTTAGAACAGGCGAGACGCACTCCTGTGAGGCTGTCATAG
- Protein Sequence
- MNISIEKKKSDCSALPKGWQREEIIRKSGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFDYQQGQINTMLLCKAKKARAQFDYRGVRSDTSLVPPIRQTASIFKQPVTVYKTQESKVKTDLKQGTQEKPKQLFWEKRLEGLTACDSNGVVGTTSLPKYIKPLGPYTSDATTIQSLATALHVSSQPITGQTGSKQTIMESPGVFLNPDQPLIAAVTITKDDLRRQEDRVKRARLRLHEALEQARRTPVRLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090793;
- 90% Identity
- iTF_00457249; iTF_00985121; iTF_00843554; iTF_00994370; iTF_00782659; iTF_00353092; iTF_00621252; iTF_00695620; iTF_00112517; iTF_00248101; iTF_00775269; iTF_01507237; iTF_00212486; iTF_00986118; iTF_00075559; iTF_00778025; iTF_01079913; iTF_00801867; iTF_00247212; iTF_00777390; iTF_00187185; iTF_00204369; iTF_01091953; iTF_01181905; iTF_00781042; iTF_01508082; iTF_00159859; iTF_00205139; iTF_01078228; iTF_00796533; iTF_00357526; iTF_01151222; iTF_00354103; iTF_01017751; iTF_01018583; iTF_00781848; iTF_00213465; iTF_00953529; iTF_01506362; iTF_00824763; iTF_00896828; iTF_01080734; iTF_00642335; iTF_00779519; iTF_00421381; iTF_00842697; iTF_00461580; iTF_01034608; iTF_00420562; iTF_00960185; iTF_00958683; iTF_01033755; iTF_00419006; iTF_00419775; iTF_00959424; iTF_00780268;
- 80% Identity
- -