Haoe003469.1
Basic Information
- Insect
- Heliconius aoede
- Gene Symbol
- -
- Assembly
- GCA_037355905.1
- Location
- JBAIZZ010000092.1:164761-170694[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0028 0.17 12.6 0.4 1 23 171 193 171 193 0.98 2 12 0.011 0.65 10.7 1.2 1 23 200 222 200 222 0.96 3 12 3.6 2.1e+02 2.8 1.8 1 23 226 248 226 248 0.94 4 12 0.002 0.12 13.1 0.1 1 22 253 274 253 274 0.93 5 12 0.0071 0.43 11.3 0.5 3 23 293 314 292 314 0.96 6 12 0.024 1.4 9.6 1.0 2 22 330 350 330 354 0.92 7 12 1 60 4.5 0.1 2 23 362 382 361 382 0.95 8 12 4.7e-05 0.0028 18.2 0.8 3 23 401 422 400 422 0.97 9 12 2.1e-05 0.0013 19.3 1.3 3 23 433 453 431 453 0.97 10 12 0.00027 0.016 15.8 0.0 1 23 459 481 459 481 0.97 11 12 0.00016 0.0097 16.5 0.2 1 23 487 509 487 509 0.95 12 12 3.4e-05 0.0021 18.6 2.7 3 23 517 538 515 538 0.95
Sequence Information
- Coding Sequence
- ATGCAGTCCCAAAAAAGCccttATCAAccacaaaatttcaataaactaTCAAAATCACCcacaatcaatataaaatttgatccAATTGACTGTAATAATGAAGTCCTTACTGAAGTTAAAACAGAGGAAAATGACGACATTGTACATGATATTAGACATATAGcTCTCACatgccaaaaaaatattgaaacagaTAACATAAAAGATTCATTCTCCGACTTAGACAATGATGAAAAGGCTAACTTAgatgatgaaataaatacacactTAGACTATGAAGTAAACTTTAAGTTagatgaaacaaataaaactgatTCAGAAGATGACTTGCCTTTGGTAGATATtagtacaaagaaaaatatgaagaaatgtACTGAAGAAAAAGCTATGAAAGTAAGGAAATATCGAAgaaaaaCAGAAGTAGATgccaaagaaattatattagacgaagaacaacaaaaaatggaaatgcTGGAACGTTCCAaatcagaaaattatataaattcacacTTTAAATGTGACTTATGTTACCGAGGATTCGTCGACCCTGTAGCTTTTGACAGACACAAGGAGAAACATGatgaaATGAGTGGCCCTCACGCGTGCCCGCTGTGCCAGCTCCGCTACTCGTCGCACAAGCGGCTCGCGGCGCACGTCGCCACGCACGTGCGCAGGTACGCGTGCACGCGCTGCCCCCACCTCGCGAGGACCAAacacCAAGCAAAAGCCCACGAGCAATGGCACGATGGCCACACTTACCCGTGTCAGCCGTGTGGACGCGTGTTTACTAAGCCCACGTCTCTTCTGTCCCACGCGCGTCGTTGTCCAGCGGGAGGGGGCGTGGGCGTGGACGAGggagaaagtagggaacgagcATGTCCACTATGTGGGGATACGTTCTCGCGCGGTCATGGACTACTTATGCATATGAGCAAATCGCACAGGTTCCagAAACAAGAGCTACCCTCAGAACCTGAGAATGATCGCACTTGCAACACTTGCTCTATAGTGTTCACGAATAGTAAAGCCCGCGTGAGACACCTGCTCACGTCGCGACGACACACACTCTATAATAGCGATTCTGAGTGCGCTATATGCGGCGCGGCGGTGTCGGCCAGCATGCGCCACGCGCATACACGCACGCACGCGCGCGCGCTGCGTCCGCCCCCTACACCCCACCCCACCGCCGCCACCGCTCCCTGCGACCAGTGTAAAGCAAGTTTCACAAGTCGTGTCAAATTACAAAATCACATCCGGAGAATGCACCTCGGCctcaaatacaacaaaaacattatatgCGAGATCTGCGGGAAGAACTGCACGTCGCTGGCGTCGCTGCGCTACCACCAGCGGCGCCACACAGGCGAGCGGCCGTACGCGTGTGGCGCCTGCGGGCTCGCGTTCGCTCGCGCGTCACGTCTGCGCGCGCACGCCCGCAAGCACTCCGGCGAGCGCCCCCATGCCTGCGCCCTGTGCCCGCGCGCCTTCGCACAGCGCGTCGCACTCACCAGGCATAATAGGGTACACACAGGTGCTAAGCCTTACGGCTGTCATATTTGCAACAAACGCTTCAGCCAGTCCAACTCCCTCCACGCGCACGTGCGCGCCCTGCACCTGAAGATACCGCGGACGAGAACCCGCGACCTACTCGATACAACACACGCACAAGTCGCGACCAACTTTAATGATTATGTACAGAATAGAGTGCAGACATAG
- Protein Sequence
- MQSQKSPYQPQNFNKLSKSPTINIKFDPIDCNNEVLTEVKTEENDDIVHDIRHIALTCQKNIETDNIKDSFSDLDNDEKANLDDEINTHLDYEVNFKLDETNKTDSEDDLPLVDISTKKNMKKCTEEKAMKVRKYRRKTEVDAKEIILDEEQQKMEMLERSKSENYINSHFKCDLCYRGFVDPVAFDRHKEKHDEMSGPHACPLCQLRYSSHKRLAAHVATHVRRYACTRCPHLARTKHQAKAHEQWHDGHTYPCQPCGRVFTKPTSLLSHARRCPAGGGVGVDEGESRERACPLCGDTFSRGHGLLMHMSKSHRFQKQELPSEPENDRTCNTCSIVFTNSKARVRHLLTSRRHTLYNSDSECAICGAAVSASMRHAHTRTHARALRPPPTPHPTAATAPCDQCKASFTSRVKLQNHIRRMHLGLKYNKNIICEICGKNCTSLASLRYHQRRHTGERPYACGACGLAFARASRLRAHARKHSGERPHACALCPRAFAQRVALTRHNRVHTGAKPYGCHICNKRFSQSNSLHAHVRALHLKIPRTRTRDLLDTTHAQVATNFNDYVQNRVQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00782095; iTF_00781273; iTF_00780512; iTF_00782892; iTF_00778318; iTF_00779734; iTF_00775514;
- 90% Identity
- iTF_00779734;
- 80% Identity
- -